AMCG00009632 (kcnd1,LOC107601760,LOC107584898)


Basic Information

Item Value
gene id AMCG00009632
gene name kcnd1,LOC107601760,LOC107584898
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 43051273 ~ 43052391 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009632
ATGGCGGCTGGCGTGGCCACCTGGCTGCCCTTCGCCCGGGCGGCGGCAGTGGGCTGGCTCCCCCTGGCCAAGAAGATCATGCCCAAGCCCCCCGTGGACAAGAAGAGCCGCAACGATGAGATCCTCTTTGTGAACGTGAGTGGCCTCCGCTTCCAGACGTGGAAGAACACGCTGGACCGCTACCCCGACACCCTGCTGGGCAGCTCGGAGAAGGAGTTCTTCTTCAACGAGGAGACCCAGGAGTACTTCTTCGACCGGGACCCCGAGATGTTCCGCCACATCCTCAACTTCTACCGCACCGGCAAGCTGCACTACCCCCGGCACGAGTGCATCCAGGCCTTCGATGAGGAGCTGGCCTTCTACGGCATCGTGCCCGAGATCATCGGCGACTGCTGCATGGAGGAGTACCGCGACCGCAAAAAGGAGAACCTGGAGCGCCTCGCTGAGGACACCGAGGCGGAGATGGCCGCCGACACGCCGCTGCCCCCCGACAGCTCGTCCCGCGAGCGCCTGTGGCGGGCATTCGAGAACCCACACACCAGCACCATGGCCCTGGTCTTCTACTACGTCACCGGCTTCTTCATCGCCGTGTCGGTCATTGCCAACGTAGTGGAGACGGTGCCCTGCCGCCCCCCCAAGGGCCGCGTGAAGGACCTGCCCTGCGGGGAGAAGTACTCGCTGGCCTTCTTCTGCATGGACACAGCCTGCGTGCTCATCTTCACCTTTGAGTACCTGATGCGTCTGTTTGCCGCCCCCAGCCGCTGCAAGTTCATGCGCTCGGTGATGAGCGTCATCGACGTGGTGGCCATCATGCCCTACTACATCGGCCTGGTCATGCCCGAGAATGAGGACGTAAGTGGCGCCTTCGTCACCCTGAGGGTCTTCCGCGTCTTCCGCATCTTCAAGTTCTCCCGCCACTCGCAGGGCCTGCGCATCCTGGGCTACACGCTGAAGAGCTGCGCCTCGGAGCTGGGATTCCTGCTCTTCTCCCTCACCATGGCCATCATCATCTTCGCCACCGTCATGTTCTACGCCGAGAAGGGCACCAAGGGTACCAACTTCACCAGCATCCCGGCGGCCTTCTGGTACACCATCGTCACCATGACCACGCTTGGGTAA

Function

symbol description
kcnd1 Predicted to enable A-type (transient outward) potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in cell projection and membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in dendritic spine; postsynaptic density; and postsynaptic membrane. Predicted to be integral component of membrane. Orthologous to human KCND1 (potassium voltage-gated channel subfamily D member 1).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily D member 1

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04891 KCND1, KV4.1; potassium voltage-gated channel Shal-related subfamily D member 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009632 True 1119 mRNA 0.63 1 43051273 43052391

Neighbor

gene id symbol gene type direction distance location
AMCG00009631 NA coding upstream 47951 42977129 ~ 43003322 (+)
AMCG00009626 mon1b coding upstream 78895 42960967 ~ 42972378 (+)
AMCG00009628 NA coding upstream 124216 42914780 ~ 42927057 (+)
AMCG00009627 nt5dc2,LOC107678756,LOC107731170,LOC108442396,LOC107745746,LOC107668043 coding upstream 137781 42891698 ~ 42913492 (+)
AMCG00009625 NA coding upstream 162782 42887108 ~ 42888491 (+)
AMCG00009633 kcnd1,LOC107584898,LOC107601760,LOC106572071 coding downstream 53088 43105479 ~ 43112950 (+)
AMCG00009636 NA coding downstream 137214 43189605 ~ 43213919 (+)
AMCG00009639 NA coding downstream 199811 43252202 ~ 43253062 (+)
AMCG00009634 NA coding downstream 206129 43258520 ~ 43266899 (+)
AMCG00009635 fam50a coding downstream 215536 43267927 ~ 43273372 (+)
G58148 NA non-coding upstream 41223 43006601 ~ 43010050 (+)
G58123 NA non-coding upstream 112399 42938007 ~ 42938874 (+)
G58008 NA non-coding upstream 414820 42629539 ~ 42636453 (+)
G57987 NA non-coding upstream 573161 42477715 ~ 42478112 (+)
G57981 NA non-coding upstream 582671 42468308 ~ 42468602 (+)
G58178 NA non-coding downstream 160319 43212710 ~ 43213028 (+)
G58195 NA non-coding downstream 197012 43249403 ~ 43249641 (+)
G58215 NA non-coding downstream 257469 43309860 ~ 43311062 (+)
G58214 dedd,LOC108411641,LOC107758014,LOC107699191,LOC107603111 non-coding downstream 266525 43318916 ~ 43324579 (+)
G58291 NA non-coding downstream 625960 43678351 ~ 43680953 (+)
G57830 NA other upstream 973032 42036018 ~ 42078241 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other upstream 1452149 41596229 ~ 41599124 (+)
G57604 NA other upstream 2056614 40990802 ~ 40994659 (+)
AMCG00009516 NA other upstream 2946221 40086474 ~ 40105052 (+)
G57430 NA other upstream 3102073 39948006 ~ 39949200 (+)
AMCG00009647 NA other downstream 384599 43436990 ~ 43444420 (+)
G58324 NA other downstream 880561 43932952 ~ 43935762 (+)
G58522 NA other downstream 1334106 44386497 ~ 44407568 (+)
AMCG00009694 LOC103385381 other downstream 1509386 44561777 ~ 44570531 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other downstream 1532171 44584562 ~ 44603609 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_08187103_08253432 KCND1 coding CI01000010 null 8187061 ~ 8253953 (-)