AMCG00009757


Basic Information

Item Value
gene id AMCG00009757
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 45521353 ~ 45531436 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009757
AAGTGTCTGACACTCTTTCTTTCCACagaaaagaacaatgaaagGACAGAAGAAGGTGAAGCCACTGAAAATCTCAAAATTGAAGCGATCGATGTCCGAGGACTACGTCAATGTGGTGCACAAGATGCGGAAAGTGCAGAAAGTAGAGAAGCACCAGCCCCAGTACGAGGAACCCCTGAGCCCCAAGAagTACTCCATACCCCAGTACAGCGACTTCGAGGACTACTCGTACTACTACGATGACAACGACAACGATgAGGGCCCTAAGAAGCGCAGCCGGCGCTCTTGTGGGAAGTGTGAGGCCTGCCTGCGCACCACCGACTGCCGCACCTGTGACTTCTGCATGGACAAGCCCAAGTTCGGCGGCCGCAACAAGAAGAGGCAGAAGTGCCGCCTGCGCCAGTGCCAGGTGGAGGCCATGAGGCACCTGCTGCCTTTCCAGCGTGGGCAGACGGCCTTCATGCCCGAGGTGGGCTGGCTGGGCCCGGGCCGGCAACGCACCGAGAAGCATCGACCTGATGCCCAATCCCGCCGCGGAAAGCCCGGCCGCCCCCGCAAGAACTGGGCCTCCTGGGAGGACTTTGAGTTCACCAACGACGAGGAGGACGATGATGAGGAAGGGTACGTGGGCACGCTGAGGCCCCGGGCACCAGGGCTGGGCCTCGGCGAGGAGGACGAGGACCTGGAGGATGAAGAGGATGACGACAGCTCGGCCGCCCCCTCGCAGatggggtcagaggtcaacTACTTCTCCTCCTATCCCGGCTACACCAAGACGGACTCGGACGAGCTGTACGTCAGCAACTACCCCCTCACCATCCAGGGCTGCTTCAGGGCTGACATCGGGAACCTGCAGCTGATGAAGGTGGGAGAGTTTCCAACCCTAAGTCCTGAGCCCAGccagcccccgcccccccccCAGAGCGCTGATCCAGCCCGAGCTGAGGGGGGGGCGCTGGATGAGGATGTGGAGATTGTGGAGGTGGACACTGGGGAGCCCGACGTGCAGGACGTCACGCCCGTGATCACCGAGATCTTCAGCCTGGCCCACCCCAGCAGCGGTGCCTCCCCCCCAGGCACCGCCGCCTCCTCCCCCTCCGCCTCCTCGTCCGACTTCCCCCCCGACCACgagctgctggagctgctgcgcACACTGCGGGGGGCCGTGCTGCCGGCGCACTGGCTGGGCCTGGCGGTTGGAGGGCCgcggctgcagctgctgcagtgCTCCAAGCTGTCTGCCATGGCCGACACGGCTGTGTTCATCGAGCCCGGCTTCTACTTCCACGTCCGGGTGCAGGAGcagccgctgctgctgtcccaCTCGCTGTTCGACGCCCACCCGGCCCGGCTGGACAGCGCGGCGGCCGTGATCGCACTGCTGCGCGACTTGGAGGGCTATGCCGTGTGCCGGGGCTACTCCCCAGCCGTGCTGCCCGACGCCCACCGCGCCACCCCCCCGGGGCCCGTGCTGTACGTGCGGGCGGCCGCCTGCGACCTGCTGGTGCCCCAGGAAGGGGAGGAGCGCTGCGACAAGTGCTGTGTCACCTCCCTGCTTTTgtgagaggagggggagggaaggaGCAGCTTCCCCGTCTttatcctcctcctcctcctcaggaCAGAGCCATAACAGCCCCTCTCCAAACCAGCTGCCTGGAGGGGGAAGGGGTAGGAGTGTGTGCTTGGGTCAGTGTGATTGTacgcgtgtctgtgtgtgtgtgcgtgtgagtgcgtgtgtctGCAGTTCTCAGTTGTCTCTTTGTTGACGGTGCTTCAATGCTCTCCAGACTTGTTTCTCACGCATGGAGGACAACGCAACGCAAAGACTCGTTAAACACAACAGAAAGCATTCTACCTCTGGGCGCCTGGCTGGGCCTCTGCTCTCCGGCCCGGCCCTCCGCCATTTTTGCAGGGCGGGGGgcacaatgtttttctttcttgaatcCCTCTGTTTATATAAcaatctcccccccccctccacccatCCTGCAATTGACGGTATGGGGTCGTGTCTGCGCACTGAATCGGCTCTGGGCgtctgcagctctgtgtgtgcGGAGAGACTTTtgttttggtggggggggtactgtactgtgtgaaaTAGTTCTCTGGCTCCTCacggtggggagagagagagagtgaaagaggaggaggaggaggaggaggaggacgacgaCGACTGGCAATACAAATTACCCATCAGCCCATTCTCTCACCGACCAGTCCGCCCCGGAAGGAGCCGCTGCGTGCCAAACGGAGCGTGTGCGAGGGGACCGCCCCCCCGTGCTCCCCTCCAGGAGCCACACCTTTGTTATTGTTGGAtttgcttttcatatttttttgagGGAAGTCTGCGTCTCGCTTCTCTGGGCAGAGCAGCTGAGCATGACACCGGCCTCCctgccttttaatttattttttaattttaatttacagatgtatatatgcattttattttgtgacagAGAAGCTGCTCTTCCTGGCTCCCCTCCCCAGTGATTGGCGCTCCGCTGCCTGTGGAAACACTACAGCTCTGACCCGACGGACCCTGCAATCTGAGGGCTGGGCCGGATCAGAATCGCGGTGTCCTTCCCACAGGCGGCGAGGTCCGAATCCACGCCCTGTAATTCACTGCtagaagccactttatactattGATACATTCTGTTTTGATTTGGCCGAGCCCCCAGTCCACCCTCTGCGTCGCGCGTCTGGACAGACTGATTGATGGTGATGTGCAGACCACCCCGCCACCGGACCCCCTGCGAATCCTAGAGCACCGGCCTGTACCTCCCACTGCAGGGCCAACTTCCGTCAGAAGCCACTTTTTTCCTACTTAGAGATCGGAACTCAACACTGTGGGGGGGGTGAGATTCTGTTAGGGATGGGAAAGTGGACGCCATGGacacacaactacacaaacCACGCCACGCAGCCCGCTGCACGGCCTCCCCCCAGCGTCACTCAGGGCCAGAGCGCCCCCCACTCAATGAAACCGTTCTTGAAACCATTTGGGTGGCTTTAGAGGCCCAGTGCATTATGGGTCAAGTCAGTCGGATTGAAATGAATTTGGACTTGGCTTTGTGTCTGTATTCTATTATGAAATACTGATTTTGgtttctgatttctgatttgattttggaaatactgtttcccccccccccaccgtaAATTTACAACCCCCACCCAaaagatactttttttttttaaatgatttattttattttatactttttttcctgCCGTCGGTCCGGGGCATCGTGTTTATTTAAGAACCGTTGAATGTGGTTACAGTGACACACTGGAGCGAGACTCGAAAGTGCtgctgaggaagaggaggaggaggaggacgaggggAGATTCATTCTTTAAGTGCAGTTTGAGTATCATGTTGCCTTGATATCTGTTTTTATGTTGGTTCTTTTGTTTGACTTTCGTACCGTTTCCTTCCCGCCCATACGGTGTGGGTTTTGCGCACCAGTGCCGCCCTCTTCGCAGGGACAGGAAGGCTCTGCCACTGATTTTAATCCAGTTCTGTAGAATAAAGGAACCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009757 True 3557 mRNA 0.58 10 45521353 45531436

Neighbor

gene id symbol gene type direction distance location
AMCG00009750 NA coding upstream 44356 45466659 ~ 45476997 (+)
AMCG00009752 NA coding upstream 67374 45437969 ~ 45453979 (+)
AMCG00009751 NA coding upstream 85488 45422527 ~ 45435865 (+)
AMCG00009753 NA coding upstream 125330 45390752 ~ 45396023 (+)
AMCG00009743 NA coding upstream 131640 45376438 ~ 45389713 (+)
AMCG00009763 plxnb3,LOC101165957,LOC102313277,LOC102780548,LOC102199036,LOC101474638 coding downstream 67171 45598607 ~ 45629378 (+)
AMCG00009764 LOC103384391,LOC107373447 coding downstream 111802 45643238 ~ 45647541 (+)
AMCG00009765 NA coding downstream 118648 45650084 ~ 45656237 (+)
AMCG00009762 NA coding downstream 125325 45656761 ~ 45660486 (+)
AMCG00009772 NA coding downstream 344197 45875633 ~ 45879015 (+)
G58876 NA non-coding upstream 8306 45512636 ~ 45513047 (+)
G58821 NA non-coding upstream 122900 45339605 ~ 45398453 (+)
G58822 NA non-coding upstream 188497 45329784 ~ 45332856 (+)
G58830 NA non-coding upstream 243757 45276488 ~ 45277596 (+)
G58825 NA non-coding upstream 246320 45266939 ~ 45275033 (+)
G58971 NA non-coding downstream 53322 45584758 ~ 45585330 (+)
G59006 NA non-coding downstream 108199 45639635 ~ 45640037 (+)
G59026 NA non-coding downstream 142493 45673929 ~ 45674702 (+)
G59028 NA non-coding downstream 144267 45675703 ~ 45683641 (+)
G59047 NA non-coding downstream 170531 45701967 ~ 45702889 (+)
AMCG00009761 NA other upstream 10316 45507767 ~ 45511037 (+)
G58747 NA other upstream 463479 45056065 ~ 45057874 (+)
AMCG00009706 pim1 other upstream 761295 44750176 ~ 44760058 (+)
G58600 plxna3,LOC107734520,LOC107584894,LOC107674285,LOC107743094 other upstream 869386 44632750 ~ 44651967 (+)
AMCG00009700 plxna3,LOC102792317,LOC102288896,LOC101485239,LOC106572068,LOC106566493 other upstream 917744 44584562 ~ 44603609 (+)
AMCG00009759 NA other downstream 28541 45559977 ~ 45572255 (+)
AMCG00009760 NA other downstream 41834 45573270 ~ 45575964 (+)
AMCG00009758 abcd1,LOC107701814,LOC107743108,LOC108440542,LOC107674359,LOC107552221,LOC107727428 other downstream 45103 45576539 ~ 45584727 (+)
G59084 NA other downstream 223150 45754586 ~ 45755115 (+)
AMCG00009782 LOC108266008,LOC103385383 other downstream 413196 45944632 ~ 45997710 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G67486 NA non-coding NC_053117.1 CM020914.1 37102992 ~ 37107459 (-)
tiger barb (Puntius tetrazona) G60937 LOC107701816,LOC107552163,LOC107743107,LOC107584915,LOC107727404 non-coding NC_056706.1 CM032075.1 4020883 ~ 4024734 (-)