RNA id: TU202642


Basic Information

Item Value
RNA id TU202642
length 514
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G149827
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 37605536 ~ 37606441 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ccacattcatactggaagctgcccagtaccaccacagtctgatctgaccacattcatactggaagctgcccagtaccaccacagtctgacctgatcacattcatactggaagctgcccagtaccatcacagtctgatctgatcacattcatactggaagctgcccagtacaaccacagtctgatctgatcacattcatactggaagctgcccagtaccaccacagtctgatctgatcacattcatactggaagctgcccagtacaaccacaagtctgatctgaccacattcataccgGAAGCTGCCCAattaccaccacagtctgatctgaccacattcatacctggaagctgcccagtaccaccacagtctgatctgaccacattcatactggaagctgcccataccaccacagactgatctgctggccactgagcagctccactggagcggttggaggttaagggccttgctcaagggcacctcagtggtggtaatgagggagggacaagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202501 lncRNA downstream 34829 37567854 ~ 37570707 (-) True G149731
TU202618 lncRNA downstream 42371 37532763 ~ 37563165 (-) True G149813
TU202506 lncRNA downstream 47601 37496101 ~ 37557935 (-) True G149736
XR_005641690.1 lncRNA downstream 90400 37513550 ~ 37515136 (-) True LOC120573343
TU202607 lncRNA downstream 159690 37433252 ~ 37445846 (-) False G149805
TU202646 lncRNA upstream 11455 37617896 ~ 37621384 (-) True G149830
TU202647 lncRNA upstream 11482 37617923 ~ 37621384 (-) False G149830
TU202624 lncRNA upstream 15192 37621633 ~ 37632587 (-) True G149817
TU202623 lncRNA upstream 18360 37624801 ~ 37627377 (-) False G149817
TU202627 lncRNA upstream 23289 37629730 ~ 37629973 (-) True G149818
XM_039823045.1 mRNA downstream 38751 37562428 ~ 37566785 (-) False LOC120573352
XM_039823044.1 mRNA downstream 38807 37562428 ~ 37566729 (-) True LOC120573352
XM_039821967.1 mRNA downstream 309371 37289238 ~ 37296165 (-) True LOC120572649
XM_039821965.1 mRNA downstream 349503 37254159 ~ 37256033 (-) True LOC120572647
XM_039821964.1 mRNA downstream 406921 37153240 ~ 37198615 (-) True LOC120572646
XM_039822929.1 mRNA upstream 48250 37654691 ~ 37675082 (-) True LOC120573284
XM_039822914.1 mRNA upstream 73218 37679659 ~ 37692835 (-) False LOC120573273
XM_039822915.1 mRNA upstream 73218 37679659 ~ 37692835 (-) False LOC120573273
XM_039822911.1 mRNA upstream 73218 37679659 ~ 37692835 (-) False LOC120573273
XM_039822912.1 mRNA upstream 73218 37679659 ~ 37692693 (-) True LOC120573273
TU202635 other downstream 2716 37600942 ~ 37602820 (-) True G149826
TU202540 other downstream 531886 37056582 ~ 37073650 (-) False G149751
TU202541 other downstream 531886 37056582 ~ 37073650 (-) True G149751
TU202465 other downstream 809447 36786761 ~ 36796089 (-) False LOC120572643
TU202468 other downstream 835009 36769815 ~ 36770527 (-) True G149706
TU202911 other upstream 237722 37844163 ~ 37888636 (-) False G149973
TU202908 other upstream 237789 37844230 ~ 37888636 (-) False G149973
TU202913 other upstream 281044 37887485 ~ 37888636 (-) False G149973
TU202950 other upstream 355077 37961518 ~ 37963721 (-) False LOC120572652
XR_005641707.1 other upstream 563052 38169493 ~ 38179480 (-) False LOC120573395

Expression Profile