RNA id: XM_039821690.1


Basic Information

Item Value
RNA id XM_039821690.1
length 1395
RNA type mRNA
GC content 0.47
exon number 5
gene id LOC120572390
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8065223 ~ 8067060 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atctgctgctacataATGAACCACCCTATGAAGagctctcaggtggtctgggtcagctctgctctctgtccccagagtcacaACTAAACATGGGGGAGTTCAGTTTGTATGCACCACATATCTGGAGCAAACTCCCAGAAATCTGCAGGTACGCTGCAACTCTCACTTCTTTTAAATCGaggctgaagacttttctttttgatgctgccttttttTAAGTCAGTGTTCAGTTCTTACACTGTGACTTTTAACTCTTCCTCAAAAATGACCTAGGATTGTCCAAAGTGTAAAACATAATAACTCTGTCCTGCTCTCCTTGCAACTATGAACTTGCAATGGTTTTTGGTGACAGCATTTCTATTGTGACTGTGAGCAGCCCGCCCCTCTTTACGGTGAGACTTCTCTTACTGGAGCACAGTTCACTTCCAGGCGTTGAAGTGGTGCAGACATACTGTTCACACAAAGATGAAGCTCGCCTCGATAACAGCTTTGCTCTGCACCTTCAGTTtgatctctgtctgtgtttctgagtTCCACACTGTGGAGCTCCAGCCTGCTGAACAAGTCACACTGATGTGCTCCAACTTCAGCAGCTCTACCGGGCACATGTTCTGGTTCAGACTGGACAGCAGACCCAACATCAGCCGTATCTCCTCTATGCAGAGCTCTGATTCAAATGCTTCACTCTACAATGGATTTCAAAATGGAAAATTTAACATGACATCCAACACCGCTACCCTCTTCCTCAACATCACCCATGTGGATTTAGCTGACTCTGGACTGTATTTCTGTGGATTTTACTTAGATGGAAAGCCAGTAATTGTTAGTGCAACATATCTAAAGGTTCAAGAAGTGTTTGATGGAATAACGAGCCTGACCAGTGTGATCCTCCTTGGTCTGATTCTTTTCCTCGTTCCAGTCGTCATTGGTCTGGTTGTCAAAATCAGCAAACTTAGCACAGCTCAGAAAGAGGGACAGACTCCACAACGCAGCGAGaacCTGGACTCTGATGCCCTGAACTATGCAGCGCTCAGTTTCGATCCAGAAGCAAGAAGCAGCAGAAAGCCTGAATCAGAGAACCAGCTGGAGTCAAATGTTGTGTATGCTGCCACCAGATAGActcaggaaacatctggaactgCAGCTCAGAGTGAAACTGATTCTTTATCAAGTTAAatgtgctctaagcgatgttgggttaTGTCATTTCTTGTTGACcttcgaagtattgtcaaacaaaacggaggctagctcgcccctccctcctcctcatcccgtcccctccccctcccttccgtgcttcctgAAACAGTCATGAACGCATTGTGGAATTAGCCtgcgtgctaacgctgctgcggtgatggctcaaccagctccttcttgtcggttattgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191454 lncRNA downstream 55364 8006593 ~ 8009859 (-) True G141932
TU191453 lncRNA downstream 58166 8005828 ~ 8007057 (-) False G141932
TU191429 lncRNA downstream 77782 7935230 ~ 7987441 (-) False G141913
TU191427 lncRNA downstream 77782 7986092 ~ 7987441 (-) False G141913
TU191440 lncRNA downstream 86434 7977874 ~ 7978789 (-) True G141920
TU191500 lncRNA upstream 13804 8080864 ~ 8081655 (-) True G141974
XR_005641441.1 lncRNA upstream 154779 8221839 ~ 8222181 (-) True LOC120572408
TU191528 lncRNA upstream 160661 8227721 ~ 8228114 (-) True G141995
TU191532 lncRNA upstream 161120 8228180 ~ 8250562 (-) True G141996
XR_005641437.1 lncRNA upstream 190472 8257532 ~ 8258820 (-) True LOC120572405
XM_039821604.1 mRNA downstream 64454 7999497 ~ 8000769 (-) True tifa
XM_039821451.1 mRNA downstream 97183 7963976 ~ 7968040 (-) True haus4
XM_039822143.1 mRNA downstream 103516 7874651 ~ 7961707 (-) True dock11
XM_039823416.1 mRNA downstream 194150 7861720 ~ 7871073 (-) True LOC120573599
XM_039823186.1 mRNA downstream 205503 7840967 ~ 7859720 (-) True LOC120573451
XM_039821656.1 mRNA upstream 8757 8075817 ~ 8079633 (-) False LOC120572369
XM_039821655.1 mRNA upstream 8757 8075817 ~ 8079633 (-) False LOC120572369
XM_039821657.1 mRNA upstream 8757 8075817 ~ 8079632 (-) False LOC120572369
XM_039821654.1 mRNA upstream 8757 8075817 ~ 8079632 (-) False LOC120572369
XM_039821652.1 mRNA upstream 8757 8075817 ~ 8079632 (-) True LOC120572369
TU191428 other downstream 79273 7982937 ~ 7985950 (-) True G141913
unassigned_transcript_685 other downstream 227929 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191399 other downstream 277628 7781944 ~ 7787595 (-) False fcer1g
TU191048 other downstream 1694130 6353464 ~ 6371093 (-) True LOC120572256
XR_005641432.1 other upstream 40587 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 40587 8107647 ~ 8111920 (-) False LOC120572400
TU191654 other upstream 398022 8465082 ~ 8465612 (-) True G142077
TU191658 other upstream 449963 8517023 ~ 8541543 (-) False LOC120572366
TU191660 other upstream 449963 8517023 ~ 8541543 (-) False LOC120572366

Expression Profile