RNA id: XM_039821713.1


Basic Information

Item Value
RNA id XM_039821713.1
length 1406
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC120572418
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 8841052 ~ 8843285 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTCACTTCTGGTTGGCCAATCAAATGCATCCTTGTCTCTGAAGAGTGGAGACAAAATGCAGATTCTTTTCATTCAGCACGACAATTTGAGCATGATGACATCTCCAAAAACTCTCTTCTATCTGACGTGTTTGTTCTTCGGAAAAGTTGCTCAGACGACTGATCCAAATCTCTCCTCATCTTTTCATCAAGAGAGTGGTTTTGTATCAGCTAAAACTGGGGATAACTTCACTTTGAGATGTTTCTATGAAGGCAATGTTGCTTCACGGTTTCACTGGTATAAGCAAACTCTGGGACAGAAACCACGGCTCATCTCTACTTATTACAAGTATGAAAAAAATGGAACATTTCATGATGAATTCGAAAACAATCCACGCTTCACATTGGATACTGAAACAGGTAAATATAACTTGAAGATCACAGATTTGCGCGTTTCAGACTCCGCTACCTACTACTGTGCaagtaataaattaataattgaatttgCGGAGGGAACCTTAGTCGATGTAGAAGGTTCAGGTTTGAAGATCCCAGCTACAGTCCATCAGTCAGCATCTGAGAGCATCCAGCCAGGAGGCTCTGTGACTCTGGACTGTACAGTACACACTGGGACCTGTGGTAGAGAACACAGTGTTTACTGGTTCAAGAAGTCGGAAGAATCTCAGCCAGGACTCATTTACACCCATGGAGGCAGGAATGATCAGTGTGAGAGGAaacccaacacacaaacacacacctgtgtcTACAAGCTGCCGATGAAGAGTCTGAATCTTTCTCATGCTGGGACCTACTACTGTGCTGTTGCCTCATGTGGACACATTCTGTTTGGAAATGGGACCAAGCTGGAGTTTGAAGatCAGTTGGTGTATTTCTTGAGCGGTGCTTTAACATTCACCACCATCCTGAGTGTTTTACTGGCTTTCTCATTGTACAAGGTGAACAAGAGAAAGAGCTGCCAATCTGCAGATAACCAAGCAAGATTTCCATCTTCCTACACAGCGAATGCAGAGgGTTACCAAGATGCAGACAACCTCCATTATGCTGCTTTAAGTGTCAACCTGCCCAACAGATCGAGAAGGCAGAGGAACAACACCAACGATGAATGTGTGTACTCCAGTGTTAAACAATAGAGCTGGACAGGTTTCATTTGCATTGTGTGAGTGAAATCTTAGGATGTGTAATGTAGATTTAGATATAGATCTTGAAATAACAAGTTTTATTTAGATGCAGATTCtttgttgttttgcatttttccaGTACAGTTAGGACAGGTTCATTGCTTGCCTTATAAAGCTCCTCTTGGGCTTCTCATCTGTGTCTTTTTCTTAATGCTTTAATGTGTATTGTGCATTTCCATGTACATTTTGTGCCTATAATGATCAAATAAATCTTATTTCTACATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191710 lncRNA downstream 20374 8820358 ~ 8820678 (-) True G142131
TU191707 lncRNA downstream 24991 8808670 ~ 8816061 (-) True G142128
XR_005641440.1 lncRNA downstream 239464 8596678 ~ 8601588 (-) True LOC120572407
XR_005641446.1 lncRNA downstream 274695 8563840 ~ 8566357 (-) True LOC120572413
TU191657 lncRNA downstream 317133 8510412 ~ 8523919 (-) False LOC120572370
TU191723 lncRNA upstream 27802 8871087 ~ 8899675 (-) True G142143
TU191724 lncRNA upstream 30974 8874259 ~ 8879372 (-) True G142144
TU191763 lncRNA upstream 189662 9032947 ~ 9105231 (-) False LOC120572236
TU191777 lncRNA upstream 279314 9122599 ~ 9123252 (-) True G142182
TU191778 lncRNA upstream 280275 9123560 ~ 9124092 (-) True G142183
XM_039821710.1 mRNA downstream 18523 8820812 ~ 8822529 (-) True LOC120572415
XM_039821711.1 mRNA downstream 23752 8815468 ~ 8817300 (-) True LOC120572416
XM_039821709.1 mRNA downstream 28402 8811091 ~ 8812650 (-) True LOC120572414
XM_039821708.1 mRNA downstream 28595 8811091 ~ 8812457 (-) False LOC120572414
XM_039823346.1 mRNA downstream 31260 8808631 ~ 8809792 (-) True LOC120573557
XM_039823348.1 mRNA upstream 1462 8844747 ~ 8846665 (-) True LOC120573558
XM_039821715.1 mRNA upstream 8125 8851410 ~ 8853449 (-) True LOC120572421
XM_039821714.1 mRNA upstream 18560 8861845 ~ 8864267 (-) True LOC120572419
XM_039821716.1 mRNA upstream 26985 8870270 ~ 8871953 (-) True LOC120572422
XM_039821735.1 mRNA upstream 37619 8880904 ~ 8885388 (-) True LOC120572438
TU191658 other downstream 299509 8517023 ~ 8541543 (-) False LOC120572366
TU191660 other downstream 299509 8517023 ~ 8541543 (-) False LOC120572366
TU191654 other downstream 375440 8465082 ~ 8465612 (-) True G142077
XR_005641432.1 other downstream 728368 8107647 ~ 8112684 (-) True LOC120572400
TU191762 other upstream 189662 9032947 ~ 9094204 (-) True LOC120572236
XR_005641406.1 other upstream 197680 9040965 ~ 9094193 (-) False LOC120572236
TU191765 other upstream 255456 9098741 ~ 9100414 (-) True G142173
TU191853 other upstream 614607 9457892 ~ 9465761 (-) False tmem256
XR_005641765.1 other upstream 1683102 10526387 ~ 10526550 (-) True LOC120573725

Expression Profile