RNA id: XM_039822702.1


Basic Information

Item Value
RNA id XM_039822702.1
length 4474
RNA type mRNA
GC content 0.49
exon number 14
gene id hspa12b
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 10904424 ~ 10919131 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCCACCCTCAGtcttcaacacacacaaacacaatttcCCAGTGAGGTAAACCCACAGAATTCCCCCCTTATGCGCTGTCATAGCCCTCCCACTCCtgcaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtcaacacttttctctgacatttctgCACAGAGCGGAGAGGCAGCGAGCTCGGCTGCAGAGAGACAAAACTACAAATCTCACTTCATTAGGAAAAGTTAGACTTTtctcagaagaagaagaagaagaagaagaagaagaagaagaaaaagagaaacataGTTCTTTTCCTTGTTGCAACTTGTCTCTCCATCCATCACATCTCATTGGGATCTTTTCTGACTAGGGAATTCCAATTTTGGGAAATCTGCCTGCAAGTGGGAagactttcatttttttaaaagggatTTCTAGAAAAGCATCCTCTTGTATTCAGTCACCGTTTTCTCCTGTTCCTCCCttctccatctccacctccctGGAGACAGACTCCGAACAACAGACTGCGGAGTTTGGGAATACTTTTGGAGAGACAAAGGACAAGAGCATAGTATTGCAACAACATTCAAAGAGACCCTGGCTCCTGTAAAGATGGCTGACGTGGTGCAGCCAGAACCCAACAGCCTGCAGATACCCGGTGATACTTTATCAGCTCCTTCATCGCCTGCCACAGCTAGAAATGACTGCAGCATCACACCCCTCACACCCTCACCCTCGCCGagGGTGGAGGTAAGACCCAGGATGTCCTGCCCGTTCTCCGTTGTCGTGGCAATAGACTTTGGGACGACCTCCAGCGGCTATGCATTTAGCTTTACACAGGACTCAGAAGCCATCCACATGATGAAGCGCTGGGAGGGCGGCGACCCCGGGGTGGCCAATCAGAAGAGCCCGACGTGTCTGCTGCTGACTCCTGAGTTGCGATTCCACAGTTTTGGGTTTGCAGCCCGGGACTTCTACCACGACCTGGACCCAGAGGAGGCCCGGCACTGGCTCTACTTCGATAAGTTCAAGATGAAGATCCATAGCACAAGTGACCTCACCATGGAGACAGAGCTGGAGGCGGTCAACGGTCGGAGGGTCAGGGCCATCGACGTGTTTGCTCACGCCCTGCGCTTCTTCAGGGAACATGCTCTAAAGGAAGTGAAGGACCAGTCGTCATCAGTGCTGGAGGGAGAGGCGATCAGATGGGTAATCACCGTCCCCGCTGTGTGGAAACAACCTGCCAAACAGTTCATGAGAGAAGCTGCATACCTGGCTGGTCTTGTGTCTCCTGACTGTCCTGAGCAGCTTCTCATCGCTCTGGAACCCGAAGCTGCGTCCATTTACTGCCGTAAGCTCCGCCTCCACCAGGTGATTGATCTGAGCGTGCAGCCAATCACAAATGGCTTTGATTTGGATGGATCCCGACCCTTTGACTCCAGCTTCAGACAAGcgaGGGAGCAGTTGAGGCGATCCAGACACAGCAGGACCTTCCTGGTGGAGAGTGGAACCGGAGAGCTGTGGTCCGAGCTCCAGACTGGTGACAGGTACATTGTTGCAGACTGCGGAGGAGGAACAGTTGACCTGACAGTCCATCAGATAGAGCAGCCACAAGGAACACTTAAAGAGCTCTACAAGGCTTCAGGCGGTCCGCACGGTGCCGTCGGAGTTGACCTGGCCTTCGAAGCCATGCTGTGCCAGATCTTTGGCGAGGACTTCATCCAGAGCTTTAAAGCCAAGCGGCCGGCGGCCTGGGTGGACCTCACCATCGCGTTCGAAGCGAGGAAACGGACGGCGGCGCCGGGCAGGGCCAACGCCCTCAACATCTCCCTGCCCTTCTCTTTCATCGACTACTACAAGAGACACAGGGGCCAGAGTGTGGAGGCCGCCCTGAGGAAGAGCAAtatgaaCATAGTGAAGTGGTCCTCCCAGGGGATGCTGCGGCTGACACAGGAAGCCATGAACGAACTCTTCCAGCCCACCATCGTCAATATTGTCAAACACATTGAGGAGCTGATGGCAAAGCCGGAGGTTCGCGGTGTGCGTTTCCTCTTCCTGGTTGGTGGTTTTGCCGAGTCGCCTATGCTGCAGAAAGCAGTCCAGAGAGCGCTGGGGCGGACGTGTCGCATCATCATCCCCCATGACGTTGGACTGACCATACTGAAGGGTGCCGTGCTCTTCGGGCTGGATCCCACTGTGGTCAGAGTGCGTCGATGCCCCCTGATCTATGGCGTTGGCGTATTGAACCGGTTCGTGGAGGGACGCCACCCTCGGGACAAACTCCTCATCAAGGACGGTCGCCAGTGGTGCACCGATATCCTGGACCGCTTCGTCTGCGTCGACCAGTCGGTGGCTCTGGGCGAGGTCGTGAGGCGGAGCTACACGCCTGCTCGTCTGGGCCAGCGGAAGATCATCATCAACATCTACTGCAGCGCCACAGACGACGTCACGTACATCACCGACCCTGGGGTCAGGAAGTGCGGGACGATCACATTAGACCTACCGGAGCCGCTACCGGGAGCAGTGGGCGGAGCTGGGGGAGGAGCCGGAGgcccagagagaagagagatcaGAGCCACCATGCAGTTTGGGGACACGGAGATCAAAGTCACAGCCGTTGACGTCATGTCTAACCGCTCCGTGCGGGCTTCCATAGACTTCCTCTCTAATTGAGGAGGAGCAGGAAGTGGAGACGGGGAttggaaaacagaaaaaaaactgattctAGGGACGATAATAGAAAAAAAGCGGTACTTTGGGAGTGGGCGACAAGTTTTTTTTGGGACTTTGCATTCCAAGAAGAAACCTACATCCTGTAATTCAGACATTTAGGCTTTATATTTACTCCTCAGAAAAAGGATAAGGAgaggaacttttttttaaactctccaGCCTTCATAAGTACATactcctcaaaaaaaaaaaaacatctcctcaacTGAAGGGTAGGGCGCCCTCTATGTACAAGAAAAGAACACATGAATTTGTCTGCCTCCTGTCTTCAGTGGAGTTTTTCATGTCATACCATATAATGCTGTCACGGGCATTTCCTGCCCAGAAAAGGTCCAGAGCAACACTATGAACTCAGTAAAAGTTCAGCCTGTCCGAGGTGTATTTCAACTTTTGCATTATACTACCTACAGTGAAACTCACTCATCCTAATAGCCAAAATCAGACTGTTGCCTTTTTGTTGTTTGCCATGTACAAGATTATTGACGCAACTACCTGGACTGCAGCTGTGACTGTGCGTCACCTAGCGGTGAAAAGACTGAACTACAAGTTGTAGATCACATGGGAAGTTTTAAGCTCCCTGGGTGCATCAAACACACACCTAAGGATCCTTCACTATGAAGGACTGTGGCATTATATGCATCTTTATTACAAAGTATGCCACCATTTACATTCAGGTGTATCGTACGGTATCTGTAGTATTTAGGACATTTTTATTGCAagttacctttttttttccttctttttgggcattttgggctttatttttgacaggacagatgaagacatgaaaggggagagagaggggggaatgacatgcagcaaagggccgcaggtcggagccgaacccgggcccgctccgtcgaggagtaaacctccacatatgggcacccgctccaccaactgagctatctgggcgccctgaaagttaccttttaatgGTATTCTTTACTTTTCACAAAGCCTACAAAAATGGTAAAATTCAAACCAGCACGAGTAACACTGGGAGCCAGGTGATTTGGGCCAAAACCTAGCTTTCACCACAGTCTCACTAGCCTCTTACAGGTTCCTTTAACCACATCTCTGGGCCTTTCTCAGCAGATGGAGATGGCTCAGTTGTCTACACTAACCGTTACATGTTAAAACGTGACTGAAGTTCCATACAACTGAGTTATCTCCATGGCAACTATCTCAATGGTAAACTTCACCAACTGAGTAAGTAAATGTAGTtttaagcttaaaaaaaaaaaaaagtcaaacctGGGATTTCTTTTGTCGAACTATGGActgtattttttaatataaGCATCTGCAGGGGCTttaactcccccccccccccttaagaCATCATACTGTGTCACATTAAGACTTGTGTTGTGTATGCTGTAATAAACTGTATTCATGTTTATGTTCACTTTAAGTAACAGATTAAGAACCACTGTACCATGTTCAACATGCTGACCCAACCTTGTTTCTtgagttttgtttattttaatctGTGCAGGTTGCAAAATGATTCCAAAGCATCATCCGTACACTGTCCTAATTTTATGACCTGTGTACCATTTCCCACAGCAAGACCATGCTTtactttatttaaaagaaagCAACACACCTGCCACTGCTGTCAACAATCTCTTCGGTCTCCACCCTTGACCAGatgtttacaaaaaacaaactgtcAACAGTATGATTTCAGCTGTGAATTTATTGATAACAATGGTCCAATAAATAGTTTCACATAGCATAA

Function

GO:

id name namespace
GO:0002040 sprouting angiogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192471 lncRNA downstream 15279 10887762 ~ 10889145 (-) True G142678
TU192205 lncRNA downstream 193299 10689412 ~ 10711125 (-) True G142514
TU192210 lncRNA downstream 193299 10702361 ~ 10711125 (-) False G142514
TU192204 lncRNA downstream 193299 10709513 ~ 10711125 (-) False G142514
TU192216 lncRNA downstream 195021 10708035 ~ 10709403 (-) True G142516
TU192481 lncRNA upstream 10179 10929310 ~ 10936171 (-) True G142687
TU192458 lncRNA upstream 10891 10930022 ~ 11144738 (-) True G142669
TU192482 lncRNA upstream 14091 10933222 ~ 10936171 (-) False G142687
TU192488 lncRNA upstream 19344 10938475 ~ 10993801 (-) True G142690
TU192443 lncRNA upstream 82305 11001436 ~ 11053706 (-) True G142668
XM_039823475.1 mRNA downstream 19913 10869920 ~ 10884511 (-) False dok1b
XM_039823474.1 mRNA downstream 19913 10869920 ~ 10884511 (-) True dok1b
XM_039821833.1 mRNA downstream 128235 10711125 ~ 10776189 (-) True sema4f
XM_039823577.1 mRNA downstream 207032 10675440 ~ 10697392 (-) False syt4
XM_039823578.1 mRNA downstream 220822 10675440 ~ 10683602 (-) True syt4
XM_039821821.1 mRNA upstream 100251 11019382 ~ 11033600 (-) True rcor2
XM_039821823.1 mRNA upstream 100759 11019890 ~ 11033187 (-) False rcor2
XM_039821822.1 mRNA upstream 100759 11019890 ~ 11033186 (-) False rcor2
XM_039821829.1 mRNA upstream 158343 11077474 ~ 11080073 (-) True arl2
XM_039821836.1 mRNA upstream 230720 11149851 ~ 11154529 (-) True gpha2
unassigned_transcript_689 other downstream 68222 10836131 ~ 10836202 (-) True trnaa-cgc_3
unassigned_transcript_688 other downstream 76870 10827483 ~ 10827554 (-) True trnaa-cgc_2
unassigned_transcript_687 other downstream 77571 10826782 ~ 10826853 (-) True trnaa-cgc_1
TU192182 other downstream 270976 10631475 ~ 10633448 (-) False si:dkey-183c6.7
XR_005641776.1 other downstream 369130 10535104 ~ 10535294 (-) True LOC120573736
TU192451 other upstream 182057 11101188 ~ 11144738 (-) False G142669
TU192526 other upstream 230877 11150008 ~ 11153750 (-) False gpha2
TU192555 other upstream 522830 11441961 ~ 11443939 (-) False G142745
TU192556 other upstream 522830 11441961 ~ 11443939 (-) True G142745
unassigned_transcript_694 other upstream 556131 11475262 ~ 11475343 (-) True trnal-aag_8

Expression Profile