RNA id: XM_039823577.1


Basic Information

Item Value
RNA id XM_039823577.1
length 2156
RNA type mRNA
GC content 0.52
exon number 6
gene id syt4
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 10675440 ~ 10697392 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcatggtccccagaggatgaatcgtaccgactttggtgatccccagacttttcctctagcgctgTGGGGGGGATTTCCAGCTGACAAACTCATTCTAAGTTGAGACAGTGGTACCCCAGGTCTCGTCCAGGTCTTGATGTTCTCCATGAAGCCCTTGATGTTCTCCATGAAACCATCCACTGGTGGAAAGTCATCAGTGGCAGTGCCAGTCGGTGTTGCTGTGGTGAGCGTCTTTGGCCTTGTCTTCACCGTGTCAGCCTTTGCGTGGATCTGTTGCCAGcgtaaaaacaccaaatcccagaagaCACCTCCTTACAAGTTTGTGCACATGCTCAAAGGGGTCGACATCTACCCAGAGAGCCTCAGCGGCAAGAAGAAGTTCGCTGCACCAGCCACCATGACAACTAACGACACCAGTAAAACTGATGTAAACGGAAACTGCCACACTGCATCGCCAATGAGTCCGACCGGCACCGGTAAACTGGCGTCAAGTCCAAACGGTTCTAGACCGGCTCTGCATCTGGATCTGGAGAAACGGGATCTGAATGGCAACTTCACCACTAAACCatttcatcaccaccaccagaaGGTGCGCAGCTCCCCAGACCTGGAGCTGCCCTCTCCCCATGCAGGGTTCACCCAACCTGGGGTGATGGACCGCAATGACCTCCCTTCACCATCCAGCACCCTCTCCAGCCAGGCACCCACCCCGGCCGTGGACAAACCccagggggaggagagggagggcgGACTAGGGACCCTCCACTTCTCCCTGGAATACCAGCCAGAGAAGAAGGCATTCATTGTCCATATTaaggaAGCCCATGGCCTGACCCCAACTGATGAGCAGtcgctgacctctgacccttaCATCAAGCTGACCCTGCTGCCAGAGAAAAAGCACCGGGTGAAGACCAGAGTCCTGAGGAAGACTCTGGACCCCGCCTTTGACGAGACCTTCAGCTTCTACGGGATCCCGCTGGCCCGAGTGTCGGAGTTGGCCCTTCACTTCATGGTGCTGAGCTTTGATAGGTTCTCCCGTGATGAGGTCATCGGAGAGACCCTTGTACCCTTGTCTGGGATTGACTTATCAGACGGGCGTATTCTGATGAGCCGAGAGATCATCAAGAAGAATGTCAAGAAGTCCTCAGGCCGAGGCGAGCTCCTGCTCTCCCTGTgttaccagtccaccaccaacACTCTGACCGTGGTCGTCCTCAAAGCTCGCCACCTGCCCAAGACTGAAAACAGTGGACCTACAGATCCATACGTCAAGGTGAACATGTACCAAGGGAAGAAGCGTGTGTGCAAGAAGAAGACCCACGTGAAGAAGTGCTCCCCCAACCCGGTCTTCAATGAGCTCTTTGTCTTTGATCTGCCCTCCAACGAGGGCCTGAGGGACACCAGCGTGGAGCTGCTGCTGATGGACTCAGACATAGGCAACTCACGCTGCCCCAACACCATCCTGGGGCGCCTGGTGTTGGGCACGTCGGTGACGGGCACGCCCGGCGAGCACTGGAGGGAGATCTGCGACCACCCGCGTCGCCAGATTGCCAAGTGGCATGGTTTGTCAGAGGATTAGAAAGCCGGGGTATTGCTGGATTCCATCTTCCATGTCTGATCTGGTCCAACCACGAGAGGGATGGAATGAGGATGGGTGGGATTTAACGTCCTGCTAGCCATTACCCATTGGACTTTCAGTGAGGGCGGGTAGGAAACAAGGGGGAGGGGACTTTGATGTTGTGTGGAGGGTCATTTGAAGTGATGTCATCATTCAatcaatcattcattcattcacttaTCTTTGAAGTTATTGGGGTTCAGCTAGGAGGCCGGGGCATGACAAAGGGAACCCCATAGCTTTAATGATCCCAAAGACTGTCACCGAAAATCACCCGGTAACATGCAACATCAtctccatggcaacaaccaATAGTCACTGTAACCGTGTGCAGTGCAGAATGTCTTAAATGTCGCTATtactcttcttcttttcttcctctgcttcttcttcttcttcttcttcttcttcttcttctcttttttcagCTCTTCCTTCTATAAATAGTAACCTAGTCCATCGTATGAAAACTGAATGAACCACATCTGACAATGCTGTAAAAATGTGCATTATTAAAGTTTATTTTATAACGCAG

Function

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016020 membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641747.1 lncRNA downstream 45980 10627342 ~ 10629460 (-) True LOC120573684
TU192161 lncRNA downstream 151649 10482541 ~ 10523791 (-) False LOC120573244
TU192163 lncRNA downstream 151649 10519046 ~ 10523791 (-) False LOC120573244
XR_005641668.1 lncRNA downstream 152373 10519619 ~ 10523067 (-) False LOC120573244
TU192160 lncRNA downstream 190821 10475237 ~ 10484619 (-) True LOC120573244
TU192210 lncRNA upstream 4969 10702361 ~ 10711125 (-) False G142514
TU192216 lncRNA upstream 10643 10708035 ~ 10709403 (-) True G142516
TU192204 lncRNA upstream 12121 10709513 ~ 10711125 (-) False G142514
TU192471 lncRNA upstream 190370 10887762 ~ 10889145 (-) True G142678
TU192484 lncRNA upstream 210535 10907927 ~ 10936171 (-) False G142687
XM_039823576.1 mRNA downstream 17467 10631478 ~ 10657973 (-) False si:dkey-183c6.7
XM_039823574.1 mRNA downstream 21044 10631478 ~ 10654396 (-) True si:dkey-183c6.7
XM_039823266.1 mRNA downstream 68017 10602742 ~ 10607423 (-) False btr33
XM_039823265.1 mRNA downstream 68017 10602742 ~ 10607423 (-) True btr33
XM_039823264.1 mRNA downstream 68476 10602742 ~ 10606964 (-) False btr33
XM_039821833.1 mRNA upstream 13733 10711125 ~ 10776189 (-) True sema4f
XM_039823475.1 mRNA upstream 172528 10869920 ~ 10884511 (-) False dok1b
XM_039823474.1 mRNA upstream 172528 10869920 ~ 10884511 (-) True dok1b
XM_039822702.1 mRNA upstream 207032 10904424 ~ 10919131 (-) True hspa12b
XM_039821821.1 mRNA upstream 321990 11019382 ~ 11033600 (-) True rcor2
TU192182 other downstream 41992 10631475 ~ 10633448 (-) False si:dkey-183c6.7
XR_005641776.1 other downstream 140146 10535104 ~ 10535294 (-) True LOC120573736
XR_005641754.1 other downstream 143593 10531684 ~ 10531847 (-) True LOC120573713
XR_005641777.1 other downstream 146068 10529189 ~ 10529372 (-) True LOC120573737
XR_005641765.1 other downstream 148890 10526387 ~ 10526550 (-) True LOC120573725
unassigned_transcript_687 other upstream 129390 10826782 ~ 10826853 (-) True trnaa-cgc_1
unassigned_transcript_688 other upstream 130091 10827483 ~ 10827554 (-) True trnaa-cgc_2
unassigned_transcript_689 other upstream 138739 10836131 ~ 10836202 (-) True trnaa-cgc_3
TU192451 other upstream 403796 11101188 ~ 11144738 (-) False G142669
TU192526 other upstream 452616 11150008 ~ 11153750 (-) False gpha2

Expression Profile