RNA id: TU192161


Basic Information

Item Value
RNA id TU192161
length 1598
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120573244
representative False

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 10475237 ~ 10523791 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAAGTTGAATccaaaaactttatttataaaaaggaaataacagGAAATTGAACAACTTAACAGAAAACTACAtaaggaaaatatttttttcataacatACATGTGATAAGATACAATTATGTTTAGTGTCAATACAACTTTTGTGATGTGTGCTgatattttcagtttttctaTTTCCTGTTTCATTCAGGAACAAGGTTGTAAGGTTGTATGCAGGTCTGATTAGATGCTTATATTTCTATGACAACTTAAGTATAATTTGCTCCTTTCTTTAACACCAGCAGTTAAGTTCCTTTTGATGGTTTTAACTGATGGGTAGCTTGTCTTCCAGGATGTTTAGCTGGTTGTTACCGTAATTGCCCTCCCTTCTCTGGTGTACACTTAGCTATTCCTCACATCATGTCCTTTGTAGTCATCCCCCCCACCCTGGTATCTCAAGTTCTCTTCATATTCTTTATCTAATGGTCTCTCCTTTATGCTTTCCTCCCAACTTCATCTCACACCCAGACCTTTCCCTTCCCGCTACTATTGGTTCCATGTTGGCCGCCGCAGCAGCCTGTGCCCAGGCCACGGTGCCGCGTGGCCGGTAGGTTCTTGTACACAGCCCGGCTGTACGGGATGAAGCACAGGCCCAGCTGAAGGTGTCGGGCCAGGCGACAGTATGCAGCCAGTGCCAGGACCAGCAGAGGGGTGACCAAGAGGAAGCCCACTACCAGTAGAGCCACGCAGCCTCCGTCAGTCAGCAGGTCTGAGCAGTAGGGGGTCGTCCCGTGAGGGCGGACCTGGGGAGCTGTAGAGTGGCAGAGGAAGCCAAATACCACCATGACAATTGCCGGTGTCAGGATGGTCCCGAACACCAGTCCAGCGAGGCAGGCGTTTATCGTGGCAATAATCAGGTTCTGAGCCGTCACCAGCACCGAGCAGGCCCAGCAGTCCAGGGACCCCCGCAGCTCCAGAGGACCTTCACTGCCCCCACCGCCGCTCTCCGCTGCAGAATAAGGAGGAGGAGTTTTGGTTATGGCTGAGGAGACGCAGGGGGGGAGCTCTGTCACCGGGAGGAGGACGAGGCCTGGTGAGACACAACAAACAATTTTCCACATTAGAAAGGAACATCCAAATTCTTAAAAGGCACTCCTAACTAGGTAATTCTTAACTGGCAACTATTGAATCCTCAACAAAAGACAACAGGAAAAGCAGGAATATTGAAGAATTACCAGGTTGAAGGAGTCATATGTGTTCATGAGCTCCTCTATGCGGTACTGCTCCAGCACCACTACGTTGGTCAGGTTGGGGCTACGCTGACGGGCGCAGTCCTCACAGTGAACCACATAGGTTTTCCTGCTGTTGCTCTCACTTGTCACAAACAACAAATTGAACACCTCCACCTGTaacagaggagaggacaggttTAGGTTAAACATTCAGAAAGTACTACTGCTATAAATCTATGCCAGTCAGTCAGCTTGCAGTAACAATGATCCAGTTTCATGGTGAAAAAGAATGCACTGTAGCTTCCTGCGACTAAATTAACCATTTGAGACAAGGTTGTGTAGTCTAAAAACAACAGCCTTGCATCCTACCTTGGTAGTAATTTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641468.1 lncRNA downstream 324399 10138387 ~ 10158142 (-) True LOC120572688
TU191977 lncRNA downstream 569632 9910700 ~ 9912909 (-) True G142342
TU191925 lncRNA downstream 672766 9798331 ~ 9809775 (-) True G142302
TU191858 lncRNA downstream 1025127 9456894 ~ 9457414 (-) True G142258
TU191855 lncRNA downstream 1030616 9451033 ~ 9451925 (-) True G142255
XR_005641747.1 lncRNA upstream 103551 10627342 ~ 10629460 (-) True LOC120573684
TU192222 lncRNA upstream 164985 10688776 ~ 10689062 (-) True G142522
TU192205 lncRNA upstream 165621 10689412 ~ 10711125 (-) True G142514
TU192210 lncRNA upstream 178570 10702361 ~ 10711125 (-) False G142514
TU192216 lncRNA upstream 184244 10708035 ~ 10709403 (-) True G142516
XM_039821448.1 mRNA downstream 706194 9770280 ~ 9776347 (-) True si:dkey-85k7.11
XM_039821447.1 mRNA downstream 709201 9770280 ~ 9773340 (-) False si:dkey-85k7.11
XM_039823543.1 mRNA downstream 714634 9766267 ~ 9767907 (-) True LOC120573658
XM_039823541.1 mRNA downstream 716930 9763672 ~ 9765611 (-) True si:dkey-85k7.10
XM_039823540.1 mRNA downstream 720913 9758545 ~ 9761628 (-) True LOC120573654
XM_039822837.1 mRNA upstream 18409 10542200 ~ 10565191 (-) False tdrd7b
XM_039822836.1 mRNA upstream 18409 10542200 ~ 10565191 (-) True tdrd7b
XM_039822692.1 mRNA upstream 55718 10579509 ~ 10590117 (-) True fam113
XM_039823260.1 mRNA upstream 67207 10590998 ~ 10602496 (-) False rpgrip1
XM_039823261.1 mRNA upstream 67207 10590998 ~ 10602496 (-) False rpgrip1
TU191853 other downstream 1016780 9457892 ~ 9465761 (-) False tmem256
TU191765 other downstream 1382127 9098741 ~ 9100414 (-) True G142173
TU191762 other downstream 1388337 9032947 ~ 9094204 (-) True LOC120572236
XR_005641406.1 other downstream 1388348 9040965 ~ 9094193 (-) False LOC120572236
TU191660 other downstream 1940998 8517023 ~ 8541543 (-) False LOC120572366
XR_005641765.1 other upstream 2596 10526387 ~ 10526550 (-) True LOC120573725
XR_005641777.1 other upstream 5398 10529189 ~ 10529372 (-) True LOC120573737
XR_005641754.1 other upstream 7893 10531684 ~ 10531847 (-) True LOC120573713
XR_005641776.1 other upstream 11313 10535104 ~ 10535294 (-) True LOC120573736
TU192182 other upstream 107684 10631475 ~ 10633448 (-) False si:dkey-183c6.7

Expression Profile