btr33 (LOC104955567,LOC103364808)


Basic Information

Item Value
gene id btr33
gene name LOC104955567,LOC103364808
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 10602742 ~ 10607423 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039823264.1
AAGAAAACTTGCAGGATGATGCATGTCATGGCCTCCCCCAGCGCTCTCCTGTCAGAGGTGCAGTTTCAGTGTTGCATCTGTCAGGAGGTTTTCTCTGAGCCCGTTTCCATCCCCTGCGGTCACAGCTTCTGCTTCACCTGCATCACATCCCACTGGGACCACGGCCTCGCCGTCAGCTGTCCCAAATGTCAGACAGTCTTTAAGGGCCGCCCAGAGCTTTGTGAAAACTCCTTCGCCAAGGAAATGTCAGAGCAGATCCGAGCGAGAAAGCAAAACGGTGTGATGCCACAGGCAGGGAAATTAATATATTGTGATGTGTGCGTGGGAAAGCAAACAAAGGCCCTGAAGTCCTGCATTGTGTGTTTGACCTCATATTGTGAGAGTCACCTGGAGCCACACCTGAGAGTTACCACCTTGAAGATTCACAAGCTAATCCAACCTGTGGCAATGCTGGAGAACCGGATGTGCAAAAGGCACCAAAGGCTCCTGGAGCTATTCTGCAGGAGCGACCagaggtgcgtgtgtgtgctgtgcacCGAGACCGACCACCGCTCTCACGACACCGTCCCAGTGGAGCGAGAGAGTCAGGAGAAGAAGGCTCAGATGAAAAGGATCGAGGCTGATGTTGAGCAGATGATTCAGGCCAGACTGCAGAAAGTGGAGGAGATCAAACACACCATGGAGCTCGGCAAAGAAAACTCAAAGAGGGACCTAGTGGAAAGCATGGAGGTCTTCTCCACTCTGCTTGGTTCACTGGAGAGATGTCAGGCTGAGCTGGCCGAGGTGATCCAGAGGAAGCaggcagcagcagagcagagagcGGAGAGGCTTATCACAGAGCTGGAGCTGGAAATCACTGAgctggagaggaagagaagtgAGATGGAACAGCTATCTCACACTGAGGACCACCTCCATCTTCTGCAGAGCTTTCCAGCTCTGAGTTTTCCTCCATCTGCCAAAGCCTGCTCTGACATCATCGTCCATTCAGACACATGTTTGGGGACTGTGAGGAGAGCGGTGGCCAACATTGAAGAGCAGCTTCAGTCTGCTTTGAAAAAGCTTTCCACTCAAGAGCATGAGAAGATGCAGCAGTATGCAGCCGATGTTCATCTGGACCCCAGGACAGCCAACCCTTGGCTGGTTCTGTCAGAGGATGGGAGACAGATCTGGGATGGAGATGTTGAGCAGAACCTGGTGGACATACCAGAGCGCTATGACACAGCACCATGTGTCCTCGCCACCAGGGGTTTCACCACAGGGAGGCACTACTGGGAGGTAGACGTGGGAGACAAAACAGCGTGGGACTTGGGTGTGGCTCGACAGTCAGTCAACAGGAAGGGTTTGGTCACGTTGAGTCCAGAGGACGGTTATTGGGCTATTTGTTTGAGGAAGGGCAGAGAATACCGGGCGTGTGCAGGACAGGCAGAGCTGCTGTGTCTCTCTCAGAGGCCGCGGGTTGTTGGGGTGTTCTTGGATTACGAGGACGGAACAATGTCCTTTTATGACGCAGAGGCCAAGTCACACATCTATTCCTTTACACGGGTCCAATTCACTGAGGCCATGTTTCCCTTTTTTAACCCAGATATGTGTGACAACGGCAGCAACAAATCACCACTTATTATCCGCCCTGTTAGTGGAGTCAGTGGAGGAGGGGATATAGATGACATTACAATATAATGGGAAATGTTCAGTGTCTGCTTTTCATGGTATTTTATATTAAACATCATGTAActgttctctcttctctctcactaGTTTTTGAAGTGGACAATTTGTGTTCCATTCACAATAATTTCCCTCTTGGATCATGTTTCTGACTCTGCCCCTCCCTCAATAAACTGTAAACTGGTG
>XM_039823265.1
CTGAGTGATATTTTTGTTTGGCagtgttacattttttattgttacCGTATTGTGATAATGTGTGTGAATATACTTATATATTTCTGTCCATCTGAAACAAACAAATGCGACCAAGCTTTATTCAAGTATACTTCCTTGTTGTTGCTCAGTCCAATAGAAAACGACACAAATACAATACTAttatataatacaatacaaagcAATTCTACACAATACAAACCCAGTAAGGCACCTGATCTAGGCATGACTCCTCCCACCCCGGAACAACATGGTGGTTGAAAAGctctggaggaaaaaaagaaaatcccagAGGGAGTGGTAACAGTGAAACTGGGAGGACTTTGGCTTCACAACTGCAGTGCCAGTGTTTGCCTTTGCTGCCTCAGAGATCAGGTTTCACATTCATTAACAAGGTATAATCAGTTAACGCTGATCTTCTTCTTTGAGGTCATGGCCTCCCCCAGCGCTCTCCTGTCAGAGGTGCAGTTTCAGTGTTGCATCTGTCAGGAGGTTTTCTCTGAGCCCGTTTCCATCCCCTGCGGTCACAGCTTCTGCTTCACCTGCATCACATCCCACTGGGACCACGGCCTCGCCGTCAGCTGTCCCAAATGTCAGACAGTCTTTAAGGGCCGCCCAGAGCTTTGTGAAAACTCCTTCGCCAAGGAAATGTCAGAGCAGATCCGAGCGAGAAAGCAAAACGGTGTGATGCCACAGGCAGGGAAATTAATATATTGTGATGTGTGCGTGGGAAAGCAAACAAAGGCCCTGAAGTCCTGCATTGTGTGTTTGACCTCATATTGTGAGAGTCACCTGGAGCCACACCTGAGAGTTACCACCTTGAAGATTCACAAGCTAATCCAACCTGTGGCAATGCTGGAGAACCGGATGTGCAAAAGGCACCAAAGGCTCCTGGAGCTATTCTGCAGGAGCGACCagaggtgcgtgtgtgtgctgtgcacCGAGACCGACCACCGCTCTCACGACACCGTCCCAGTGGAGCGAGAGAGTCAGGAGAAGAAGGCTCAGATGAAAAGGATCGAGGCTGATGTTGAGCAGATGATTCAGGCCAGACTGCAGAAAGTGGAGGAGATCAAACACACCATGGAGCTCGGCAAAGAAAACTCAAAGAGGGACCTAGTGGAAAGCATGGAGGTCTTCTCCACTCTGCTTGGTTCACTGGAGAGATGTCAGGCTGAGCTGGCCGAGGTGATCCAGAGGAAGCaggcagcagcagagcagagagcGGAGAGGCTTATCACAGAGCTGGAGCTGGAAATCACTGAgctggagaggaagagaagtgAGATGGAACAGCTATCTCACACTGAGGACCACCTCCATCTTCTGCAGAGCTTTCCAGCTCTGAGTTTTCCTCCATCTGCCAAAGCCTGCTCTGACATCATCGTCCATTCAGACACATGTTTGGGGACTGTGAGGAGAGCGGTGGCCAACATTGAAGAGCAGCTTCAGTCTGCTTTGAAAAAGCTTTCCACTCAAGAGCATGAGAAGATGCAGCAGTATGCAGCCGATGTTCATCTGGACCCCAGGACAGCCAACCCTTGGCTGGTTCTGTCAGAGGATGGGAGACAGATCTGGGATGGAGATGTTGAGCAGAACCTGGTGGACATACCAGAGCGCTATGACACAGCACCATGTGTCCTCGCCACCAGGGGTTTCACCACAGGGAGGCACTACTGGGAGGTAGACGTGGGAGACAAAACAGCGTGGGACTTGGGTGTGGCTCGACAGTCAGTCAACAGGAAGGGTTTGGTCACGTTGAGTCCAGAGGACGGTTATTGGGCTATTTGTTTGAGGAAGGGCAGAGAATACCGGGCGTGTGCAGGACAGGCAGAGCTGCTGTGTCTCTCTCAGAGGCCGCGGGTTGTTGGGGTGTTCTTGGATTACGAGGACGGAACAATGTCCTTTTATGACGCAGAGGCCAAGTCACACATCTATTCCTTTACACGGGTCCAATTCACTGAGGCCATGTTTCCCTTTTTTAACCCAGATATGTGTGACAACGGCAGCAACAAATCACCACTTATTATCCGCCCTGTTAGTGGAGTCAGTGGAGGAGGGGATATAGATGACATTACAATATAATGGGAAATGTTCAGTGTCTGCTTTTCATGGTATTTTATATTAAACATCATGTAActgttctctcttctctctcactaGTTTTTGAAGTGGACAATTTGTGTTCCATTCACAATAATTTCCCTCTTGGATCATGTTTCTGACTCTGCCCCTCCCTCAATAAACTGTAAACTGGTG
>XM_039823266.1
CTGAGTGATATTTTTGTTTGGCagtgttacattttttattgttacCGTATTGTGATAATGTGTGTGAATATACTTATATATTTCTGTCCATCTGAAACAAACAAATGCGACCAAGCTTTATTCAAGTATACTTCCTTGTTGTTGCTCAGTCCAATAGAAAACGACACAAATACAATACTAttatataatacaatacaaagcAATTCTACACAATACAAACCCAGTAAGGCACCTGATCTAGGCATGACTCCTCCCACCCCGGAACAACATGGTGGTTGAAAAGctctggaggaaaaaaagaaaatcccagAGGGAGTGGTAACAGTGAAACTGGGAGGACTTTGGCTTCACAACTGCAGTGCCAGTGTTTGCCTTTGCTGCCTCAGAGATCAGGTTTCACATTCATTAACAAGGTCATGGCCTCCCCCAGCGCTCTCCTGTCAGAGGTGCAGTTTCAGTGTTGCATCTGTCAGGAGGTTTTCTCTGAGCCCGTTTCCATCCCCTGCGGTCACAGCTTCTGCTTCACCTGCATCACATCCCACTGGGACCACGGCCTCGCCGTCAGCTGTCCCAAATGTCAGACAGTCTTTAAGGGCCGCCCAGAGCTTTGTGAAAACTCCTTCGCCAAGGAAATGTCAGAGCAGATCCGAGCGAGAAAGCAAAACGGTGTGATGCCACAGGCAGGGAAATTAATATATTGTGATGTGTGCGTGGGAAAGCAAACAAAGGCCCTGAAGTCCTGCATTGTGTGTTTGACCTCATATTGTGAGAGTCACCTGGAGCCACACCTGAGAGTTACCACCTTGAAGATTCACAAGCTAATCCAACCTGTGGCAATGCTGGAGAACCGGATGTGCAAAAGGCACCAAAGGCTCCTGGAGCTATTCTGCAGGAGCGACCagaggtgcgtgtgtgtgctgtgcacCGAGACCGACCACCGCTCTCACGACACCGTCCCAGTGGAGCGAGAGAGTCAGGAGAAGAAGGCTCAGATGAAAAGGATCGAGGCTGATGTTGAGCAGATGATTCAGGCCAGACTGCAGAAAGTGGAGGAGATCAAACACACCATGGAGCTCGGCAAAGAAAACTCAAAGAGGGACCTAGTGGAAAGCATGGAGGTCTTCTCCACTCTGCTTGGTTCACTGGAGAGATGTCAGGCTGAGCTGGCCGAGGTGATCCAGAGGAAGCaggcagcagcagagcagagagcGGAGAGGCTTATCACAGAGCTGGAGCTGGAAATCACTGAgctggagaggaagagaagtgAGATGGAACAGCTATCTCACACTGAGGACCACCTCCATCTTCTGCAGAGCTTTCCAGCTCTGAGTTTTCCTCCATCTGCCAAAGCCTGCTCTGACATCATCGTCCATTCAGACACATGTTTGGGGACTGTGAGGAGAGCGGTGGCCAACATTGAAGAGCAGCTTCAGTCTGCTTTGAAAAAGCTTTCCACTCAAGAGCATGAGAAGATGCAGCAGTATGCAGCCGATGTTCATCTGGACCCCAGGACAGCCAACCCTTGGCTGGTTCTGTCAGAGGATGGGAGACAGATCTGGGATGGAGATGTTGAGCAGAACCTGGTGGACATACCAGAGCGCTATGACACAGCACCATGTGTCCTCGCCACCAGGGGTTTCACCACAGGGAGGCACTACTGGGAGGTAGACGTGGGAGACAAAACAGCGTGGGACTTGGGTGTGGCTCGACAGTCAGTCAACAGGAAGGGTTTGGTCACGTTGAGTCCAGAGGACGGTTATTGGGCTATTTGTTTGAGGAAGGGCAGAGAATACCGGGCGTGTGCAGGACAGGCAGAGCTGCTGTGTCTCTCTCAGAGGCCGCGGGTTGTTGGGGTGTTCTTGGATTACGAGGACGGAACAATGTCCTTTTATGACGCAGAGGCCAAGTCACACATCTATTCCTTTACACGGGTCCAATTCACTGAGGCCATGTTTCCCTTTTTTAACCCAGATATGTGTGACAACGGCAGCAACAAATCACCACTTATTATCCGCCCTGTTAGTGGAGTCAGTGGAGGAGGGGATATAGATGACATTACAATATAATGGGAAATGTTCAGTGTCTGCTTTTCATGGTATTTTATATTAAACATCATGTAActgttctctcttctctctcactaGTTTTTGAAGTGGACAATTTGTGTTCCATTCACAATAATTTCCCTCTTGGATCATGTTTCTGACTCTGCCCCTCCCTCAATAAACTGTAAACTGGTG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039823264.1 False 1854 mRNA 0.51 8 10602742 10606964
XM_039823265.1 True 2277 mRNA 0.49 8 10602742 10607423
XM_039823266.1 False 2243 mRNA 0.49 8 10602742 10607423

Neighbor

gene id symbol gene type direction distance location
rpgrip1 LOC103146607,LOC106933061,LOC103480551,LOC107099025 coding downstream 246 10590998 ~ 10602496 (-)
fam113 LOC101467090 coding downstream 12625 10579509 ~ 10590117 (-)
tdrd7b LOC103364796,LOC104955570 coding downstream 37551 10542200 ~ 10565191 (-)
si:dkey-85k7.11 LOC104946303,LOC103360465,LOC101470297,LOC102289136,LOC102796032,LOC100710889 coding downstream 826395 9770280 ~ 9776347 (-)
LOC120573658 LOC103360465,LOC108242867 coding downstream 834835 9766267 ~ 9767907 (-)
syt4 syt4 coding upstream 68017 10675440 ~ 10697392 (-)
sema4f LOC103364805 coding upstream 103702 10711125 ~ 10776189 (-)
trnaa-cgc_1 NA coding upstream 219359 10826782 ~ 10826853 (-)
trnaa-cgc_2 NA coding upstream 220060 10827483 ~ 10827554 (-)
trnaa-cgc_3 NA coding upstream 228708 10836131 ~ 10836202 (-)
LOC120573736 NA non-coding downstream 67448 10535104 ~ 10535294 (-)
LOC120573713 NA non-coding downstream 70895 10531684 ~ 10531847 (-)
LOC120573737 NA non-coding downstream 73370 10529189 ~ 10529372 (-)
LOC120573725 NA non-coding downstream 76192 10526387 ~ 10526550 (-)
LOC120573244 kdm6b,tmem88,LOC107664277,LOC106608825,LOC106577775,LOC104964151,LOC103375639,LOC103146602,LOC102237254 non-coding downstream 78951 10475237 ~ 10523791 (-)
LOC120573684 NA non-coding upstream 19919 10627342 ~ 10629460 (-)
G142522 NA non-coding upstream 81353 10688776 ~ 10689062 (-)
G142514 NA non-coding upstream 81989 10689412 ~ 10711125 (-)
G142516 NA non-coding upstream 100612 10708035 ~ 10709403 (-)
G142678 NA non-coding upstream 280339 10887762 ~ 10889145 (-)
tmem256 tmem256,LOC103358394 other downstream 1136963 9457850 ~ 9465779 (-)
chrnb1l LOC101463714,LOC102292928,LOC102798105 other downstream 1448809 9130643 ~ 9153933 (-)
LOC120572236 LOC102083041 other downstream 1497511 9032947 ~ 9105231 (-)
G142173 NA other downstream 1502328 9098741 ~ 9100414 (-)
LOC120572366 NA other downstream 2059010 8517023 ~ 8543732 (-)
si:dkey-183c6.7 LOC103364800,LOC108242893,LOC102223112,LOC106525003,LOC106907808,LOC106948277,LOC103480784,LOC103131169 other upstream 24052 10631475 ~ 10657973 (-)
G142669 NA other upstream 322599 10930022 ~ 11144738 (-)
gpha2 gpha2 other upstream 542428 11149851 ~ 11154529 (-)
G142745 NA other upstream 834538 11441961 ~ 11443939 (-)
prox3 LOC104947722,LOC103363229 other upstream 847592 11455015 ~ 11467019 (-)

Expression


Co-expression Network