RNA id: TCONS_00072158


Basic Information

Item Value
RNA id TCONS_00072158
length 781
lncRNA type read_through
GC content 0.44
exon number 5
gene id XLOC_035498
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13518522 ~ 13597892 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaaatatttgacttttttttttttaagtggaaacTGAAAGTTATTGAATCAATAAACTACTTATATTTATCCCtacacaaaataatacattttagctCACGGTCTGATGataaaattatgaatatatattcaCTAAACATATTAAACTGTGTTTAGCCAATTTATCAAACAGCAGTGAAATATTAGTGTTTGACGAATAAAATCTTGAAGCAAAAATCGCGTGTGCGCGTGCGCGACTGCCCATGAGTGAGACGGCCGTTGGTTTGGAAGGAGCAGATTCAAATTCCAGTGGAGCAACGGCAGAAATCCGAGGAAACATCATATTCGACGGGTTTCCTTCAACAACGTTACGAGTCATCAGAGGAGGAGCCTAGTGAATAAGTGTGAGTGTGAAGCTGTAGGCctggagacccaactgcacgctcagacctgcaAGCTCAGACCTGCACTTCTAGACCCATCGTTTTCTCAGACAGTACCACCTGCTGTTGGGTTGGGGGAGGCGACAGCGACGGAGgcccaactgcacgctcagaccaGCACTTTCTAGCAAGCAGCAACATCAAACATGTGCTGCTTGCCTCCTCTGTCCATTTTCCATCAGTCTACACAGCAAATAAGCAGAGCAGGTTGCACTGAGGTGCTGTTTCTGTTTGCCTCTTGTATCCATATCCATCAGTCTACACAGCAAATAAACAGAGCAGGATACACAGAGGGCCTACGTTCTGAATGATGTTCCCAGTAAAGAGATGTCTACTTCCATCATTGTCTTCTTGACCCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069638 lncRNA upstream 119053 13397583 ~ 13399469 (+) True XLOC_035496
TCONS_00069631 lncRNA upstream 404993 13107023 ~ 13113529 (+) False XLOC_035494
TCONS_00069629 lncRNA upstream 420667 13093574 ~ 13097855 (+) True XLOC_035493
TCONS_00072156 lncRNA upstream 455384 13027760 ~ 13063138 (+) False XLOC_035489
TCONS_00072157 lncRNA upstream 455384 13040694 ~ 13063138 (+) True XLOC_035489
TCONS_00072160 lncRNA downstream 89212 13687104 ~ 13692006 (+) True XLOC_035499
TCONS_00072161 lncRNA downstream 158121 13756013 ~ 13760915 (+) True XLOC_035502
TCONS_00072162 lncRNA downstream 197089 13794981 ~ 13799369 (+) True XLOC_035503
TCONS_00069648 lncRNA downstream 312231 13910123 ~ 13913519 (+) True XLOC_035504
TCONS_00069649 lncRNA downstream 373525 13971417 ~ 13980643 (+) False XLOC_035505
TCONS_00069639 mRNA upstream 13036 13503377 ~ 13505486 (+) False XLOC_035497
TCONS_00069640 mRNA upstream 13036 13503491 ~ 13505486 (+) True XLOC_035497
TCONS_00069637 mRNA upstream 105925 13389115 ~ 13412597 (+) False XLOC_035496
TCONS_00069636 mRNA upstream 106023 13389115 ~ 13412499 (+) False XLOC_035496
TCONS_00069635 mRNA upstream 106023 13389115 ~ 13412499 (+) False XLOC_035496
TCONS_00069643 mRNA downstream 97058 13694950 ~ 13696012 (+) True XLOC_035500
TCONS_00069644 mRNA downstream 102713 13700605 ~ 13787309 (+) False XLOC_035501
TCONS_00069645 mRNA downstream 171622 13769514 ~ 13788311 (+) True XLOC_035501
TCONS_00069646 mRNA downstream 252107 13849999 ~ 13955872 (+) False XLOC_035504
TCONS_00069652 mRNA downstream 460754 14058646 ~ 14060244 (+) True XLOC_035507
TCONS_00069632 other upstream 364944 13143165 ~ 13153578 (+) True XLOC_035494
TCONS_00069614 other upstream 1658378 11860028 ~ 11860144 (+) True XLOC_035486
TCONS_00069612 other upstream 1803240 11687257 ~ 11715282 (+) False XLOC_035484
TCONS_00069600 other upstream 2674454 10843952 ~ 10844068 (+) True XLOC_035474
TCONS_00069587 other upstream 3624734 9893672 ~ 9893788 (+) True XLOC_035461
TCONS_00069647 other downstream 290926 13888818 ~ 13944141 (+) False XLOC_035504
TCONS_00069654 other downstream 572011 14169903 ~ 14170572 (+) True XLOC_035508
TCONS_00069656 other downstream 817806 14415698 ~ 14415823 (+) True XLOC_035511
TCONS_00069660 other downstream 1208282 14806174 ~ 14806290 (+) True XLOC_035515
TCONS_00069670 other downstream 1471808 15069700 ~ 15078299 (+) False XLOC_035519

Expression Profile

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