RNA id: TCONS_00069641


Basic Information

Item Value
RNA id TCONS_00069641
length 782
lncRNA type antisense
GC content 0.40
exon number 3
gene id XLOC_035498
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 13518522 ~ 13597892 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAGACGGCCGTTGGTTTGGAAGGAGCAGATTCAAATTCCAGTGGAGCAACGGCAGAAATCCGAGGAAACATCATATTCGACGGGTTTCCTTCAACAACGTTACGAGTCATCAGAGGAGGAGCCTAGTGAATAAGTGTGAGTGTGAAGCTGTAGGCctggagacccaactgcacgctcagacctgcaAGCTCAGACCTGCACTTCTAGACCCATCGTTTTCTCAGACAGTACCACCTGCTGTTGGGTTGGGGGAGGCGACAGCGACGGAGgcccaactgcacgctcagaccaGCACTTTCTAGCAAGCAGCAACATCAAACATGTGCTGCTTGCCTCCTCTGTCCATTTTCCATCAGTCTACACAGCAAATAAGCAGAGCAGGTTGCACTGAGGTATGCAAGTACTGTACATTTTGACAGACAGTTAAAATGTTCATTGTAAATTTAGACCAAATcaatcaaacacagatttgaaacCACTTTAGCTATTGTTGGTATAAAGTTGTAAAATTACTTTCAAGATGGATTTACAAACACCAGAAACACAAGCTATTGACCATGCTCATgactttaataacatttaaacttTCTATTGTTTACCATATTCATGGCAAATTGTTGACTATTAAATGATACGGtaagaaaattaaacaataaatcactgtaaaaataaatatcctTCAGAACACCAAATTTAACAATAACAAGCACTCATTAAGCAAAAGACAGACTGGTCAAAGAAAcgtgaataatgaataaaaaaaatctagtaaatcaatac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000144942

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00069638 lncRNA upstream 119299 13397583 ~ 13399469 (+) True XLOC_035496
TCONS_00069631 lncRNA upstream 405239 13107023 ~ 13113529 (+) False XLOC_035494
TCONS_00069629 lncRNA upstream 420913 13093574 ~ 13097855 (+) True XLOC_035493
TCONS_00072156 lncRNA upstream 455630 13027760 ~ 13063138 (+) False XLOC_035489
TCONS_00072160 lncRNA downstream 131753 13687104 ~ 13692006 (+) True XLOC_035499
TCONS_00072161 lncRNA downstream 200662 13756013 ~ 13760915 (+) True XLOC_035502
TCONS_00072162 lncRNA downstream 239630 13794981 ~ 13799369 (+) True XLOC_035503
TCONS_00069648 lncRNA downstream 354772 13910123 ~ 13913519 (+) True XLOC_035504
TCONS_00069649 lncRNA downstream 416066 13971417 ~ 13980643 (+) False XLOC_035505
TCONS_00069639 mRNA upstream 13282 13503377 ~ 13505486 (+) False XLOC_035497
TCONS_00069640 mRNA upstream 13282 13503491 ~ 13505486 (+) True XLOC_035497
TCONS_00069637 mRNA upstream 106171 13389115 ~ 13412597 (+) False XLOC_035496
TCONS_00069636 mRNA upstream 106269 13389115 ~ 13412499 (+) False XLOC_035496
TCONS_00069643 mRNA downstream 139599 13694950 ~ 13696012 (+) True XLOC_035500
TCONS_00069644 mRNA downstream 145254 13700605 ~ 13787309 (+) False XLOC_035501
TCONS_00069645 mRNA downstream 214163 13769514 ~ 13788311 (+) True XLOC_035501
TCONS_00069646 mRNA downstream 294648 13849999 ~ 13955872 (+) False XLOC_035504
TCONS_00069652 mRNA downstream 503295 14058646 ~ 14060244 (+) True XLOC_035507
TCONS_00069632 other upstream 365190 13143165 ~ 13153578 (+) True XLOC_035494
TCONS_00069614 other upstream 1658624 11860028 ~ 11860144 (+) True XLOC_035486
TCONS_00069612 other upstream 1803486 11687257 ~ 11715282 (+) False XLOC_035484
TCONS_00069600 other upstream 2674700 10843952 ~ 10844068 (+) True XLOC_035474
TCONS_00069587 other upstream 3624980 9893672 ~ 9893788 (+) True XLOC_035461
TCONS_00069647 other downstream 333467 13888818 ~ 13944141 (+) False XLOC_035504
TCONS_00069654 other downstream 614552 14169903 ~ 14170572 (+) True XLOC_035508
TCONS_00069656 other downstream 860347 14415698 ~ 14415823 (+) True XLOC_035511
TCONS_00069660 other downstream 1250823 14806174 ~ 14806290 (+) True XLOC_035515
TCONS_00069670 other downstream 1514349 15069700 ~ 15078299 (+) False XLOC_035519

Expression Profile

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