RNA id: TCONS_00006833


Basic Information

Item Value
RNA id TCONS_00006833
length 2733
RNA type mRNA
GC content 0.52
exon number 10
gene id XLOC_003483
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 25634041 ~ 25679721 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCCAGCAACTATGACATCACAGCTGTACGCACCATCACAGTCCCGCCACCATAGGATTATCAGGGCGCCCAAACCACACGTGGGCTCCCTCATTCACATCATGTGGATACTAACAATGGGATTTACTCCAGAATCCCAGGCCGCTTCCTCAGATACTCAACCCCACTCCATAAAGATTGAAGGAGACATTACTCTCGGAGGGCTCTTTCCGGTTCATTCCAGGGGCCCTGCTGGAATCCCTTGTGGAGAGGTTAAGAAGGAGAAAGGCATCCACAGAATGGAGGCCATGTTGTACGCTCTGGACCAGATCAACAGTGACCCGGACCTGTTGCCTAACATCACGCTGGGCGCCAGGATTTTGGACACGTGCTCCAGGGATACATATGCACTGGAGCAGTCGCTCACGTTTGTCCAGGCCCTCATCCAGAAGGACAATTCAGACGTTCGATGCTCCAATGGAGAGCCGCCTATCATCCCAAAACCTGAGCGCGTGGTGGGGGTCATCGGGGCTTCGGCCAGCTCTGTGTCCATTATGGTGGCCAATGTTCTCCGATTGTTTGCGATTCCTCAGATCAGTTATGCTTCGACAGCACCCGAGCTTAGTGACAACAACCGCTATGACTTTTTCTCCCGAGTCGTGCCGCCTGATTCCTTTCAGGCCCAGGCCATGGTGGACATTGTCAAAGCCATGGGGTGGAATTATGTTTCCACTCTGGCATCAGAGGGCAACTATGGAGAGAGTGGTGTAGACGCTTTCATCCAGATATCCAGGGAAGCAGgaGGTCTTTGCATCGCACAGGCCATTAAAATTCCTCGGGAGCCGAGACCTGGAGAGTTTGACAAGATCATCAAAAGGCTAATGGAGACATCCAATGCCAGAGGGGTTATTATTTTCGCTAATGAAGATGACATCAAGCGTGTCCTAGAAGCTGCAAAAAGAGCCAATCTTACTGGTCACTTTTTGTTTGTGGGATCTGACAGCTGGGGTGCAAAAATCTCACCAATTCTGAACCAGGAAGACGTGGCTGAGGGTGCAGTAACCATCTTGCCCAAACGGGCATCCATTGAAGGTTTCGATCAATACTTCACCACAAGATCCCTGGAAAACAACAGGAGGAACATCTGGTTTGCTGAATTCTGGGAGGACGACTTCAAATGCAAGCTGACACGGCCTGGAATCAGAGGCGACGGCGGGCTGAGGAAATGCACAGGAGAGGAACGAATCGGCCGGGATTCGGGGTACGAACAGGAAGGCAAGGTGCAGTTTGTGATCGACGCGGTGTACGCAATGGCCCACGCTCTTCACAGCATGCACATCGACCTCTGTCCCGGTTCAATGGGTGTTTGCGACAAAATGGACCCGGTGGATGGAAGAATGCTGCTGACTTACATCCGTGCCGTCAATTTTAATGGCAGCGCCGGCACAGGTGTGATGTTTAATGAAAATGGTGATGCCCCAGGACGATACGATATCTTCCAGTACCAGCTTTCCAACACCACCAACCCGGGATATAAACTCATCGGCCAGTGGACCAACCACTTACGACTCAGTGCTGAAGATATGCAGTGGTCTGGAGGGGAAAAGCTGGTTCCAGACTCAGTGTGCAGTTTTCCGTGTGAATCCGGGGAGAGGAAGAGGATGGTGAAGGGGGTGCCATGCTGTTGGCATTGTGAGCTCTGTGATGGGTATCAGTTCCTACTGGATGAATTTAACTGTGACATGTGCCCGTTTGACATGAGACCCACCCCCAACCGCACGGCCTGCCGTCCCACACCCATCATCAAGCTGGAGTGGAGCTCTCCGTGGGCCATTATCCCTGTTTTTCTGGCTGTATTGGGAATTCTTGCAACAACGGGAGTCATCGCCACCTTCATACGCTTTAATGACACCCCAATAGTCCGCGCTTCGGGCCGAGAGCTCAGTTATGTGCTTCTGACAGGCATCTTCCTCATATATCTTATCACGTTCCTCATGATCGCTGAGCCAGGCACTGTGGTGTGTGCATTTCGGAGGCTGCTCTTGGGACTGGGGATGTGCATCAGTTACTCTGCCATGCTCACCAAAACCAATCGAATCTACAGGATCTTTGAGCAGGGGAAGAAATCGGTCACACCGCCAAAGTTTATCAGCCCCACGTCCCAGCTGATCATCACATTTATTCTGATCTCAGTACAGCTCTTGGGTATTTTCATATGGTTTGGAGTGGTTCCTCCTCACACCAATGTGGACTTTGATGAGCTGCGTCCTCCAAACCCTGAGTTTGCGCGAGGGATTCTGAAGTGTGACATGTCGGATCTGTCTCTGATTGGCTGTCTGAGTTACAGTATGGGGCTGATGGTCACCTGTACAGTCTACGCCATCAAGAGCAGAGGAGTTCCTGAAACCTTCAACGAGGCCAAACCCATTGGCTTTACCATGTACACCACGTGCATCATCTGGCTGGCCTTCGTCCCCATCTTTTTTGGCACATCACAATCCACCGAAAAGATGTTCATTCAGACCACCACGCTGACCGTGTCCATGAGTTTGAGTGCCACGGTGTCCCTGGGCATGTTGTACATCCCCAAAGTCTATGTCATCATCTTCCACCCCGAGCAGAACGTGCAGAAGCGCAAGCGCAGCTTCAAAGCCGTGGCTCAAGCGGCCACAGTCTCCACGCATCTCTCGCAGAAATCCAGTGACAAGCAGAATGGAGAGACCAAAGTTGAGCCAGACAGATCGCAGTGAAGGT

Function

GO:

id name namespace
GO:0051966 regulation of synaptic transmission, glutamatergic biological_process
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007216 G protein-coupled glutamate receptor signaling pathway biological_process
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0001642 group III metabotropic glutamate receptor activity molecular_function
GO:0008066 glutamate receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-021120-2 Predicted to enable group III metabotropic glutamate receptor activity. Acts upstream of or within detection of light stimulus involved in visual perception. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in forebrain; pharynx; and retina. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1B. Orthologous to human GRM6 (glutamate metabotropic receptor 6).

Ensembl:

ensembl_id ENSDART00000143677

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006823 lncRNA upstream 89682 25547854 ~ 25548546 (+) True XLOC_003479
TCONS_00006816 lncRNA upstream 155991 25481107 ~ 25482237 (+) False XLOC_003476
TCONS_00006818 lncRNA upstream 155991 25481115 ~ 25482237 (+) True XLOC_003476
TCONS_00008402 lncRNA upstream 379231 25256812 ~ 25258997 (+) False XLOC_003467
TCONS_00008616 lncRNA downstream 153680 25829370 ~ 25830337 (+) True XLOC_003487
TCONS_00008617 lncRNA downstream 512827 26188517 ~ 26196145 (+) True XLOC_003489
TCONS_00008618 lncRNA downstream 550392 26226082 ~ 26234069 (+) True XLOC_003490
TCONS_00006845 lncRNA downstream 720223 26395913 ~ 26398030 (+) False XLOC_003492
TCONS_00006846 lncRNA downstream 720949 26396639 ~ 26398487 (+) True XLOC_003492
TCONS_00006830 mRNA upstream 6786 25619932 ~ 25631442 (+) True XLOC_003482
TCONS_00006829 mRNA upstream 13256 25619892 ~ 25624972 (+) False XLOC_003482
TCONS_00006828 mRNA upstream 19645 25596038 ~ 25618583 (+) True XLOC_003481
TCONS_00006827 mRNA upstream 23144 25583950 ~ 25615084 (+) False XLOC_003481
TCONS_00006826 mRNA upstream 62030 25560632 ~ 25576198 (+) True XLOC_003480
TCONS_00006834 mRNA downstream 5645 25681335 ~ 25689873 (+) False XLOC_003484
TCONS_00006835 mRNA downstream 5651 25681341 ~ 25689754 (+) True XLOC_003484
TCONS_00006836 mRNA downstream 17705 25693395 ~ 25709311 (+) True XLOC_003485
TCONS_00006837 mRNA downstream 59788 25735478 ~ 25750060 (+) True XLOC_003486
TCONS_00006839 mRNA downstream 687745 26363435 ~ 26369549 (+) True XLOC_003491
TCONS_00006817 other upstream 155258 25481107 ~ 25482970 (+) False XLOC_003476
TCONS_00006814 other upstream 159810 25477743 ~ 25478418 (+) True XLOC_003475
TCONS_00006802 other upstream 335671 25296376 ~ 25302557 (+) False XLOC_003469
TCONS_00006788 other upstream 510366 25096197 ~ 25127862 (+) False XLOC_003464
TCONS_00006785 other upstream 597591 25038273 ~ 25040637 (+) True XLOC_003461
TCONS_00006838 other downstream 402257 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006853 other downstream 928921 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006865 other downstream 1844766 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006890 other downstream 3676411 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006893 other downstream 3891057 29566747 ~ 29571528 (+) True XLOC_003523

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000306_03219408_03238461.mRNA True 2734 mRNA 0.51 11 CI01000306 3219408 ~ 3238474 (+)
bowfin (Amia calva) AMCG00009712 True 3252 mRNA 0.61 13 CM030126.1 44856527 ~ 44881725 (+)