RNA id: XM_039823424.1


Basic Information

Item Value
RNA id XM_039823424.1
length 4858
RNA type mRNA
GC content 0.50
exon number 8
gene id kiaa0232
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 6420533 ~ 6432598 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGAGGTTTGCCTTGTTGCCTAGATACGAACGCGGATGGTGGCGCATTTAGGAGTCCTTCCCTGAACGAAACTGGCTTTTCGATAGCGGACATTGTGGTTCTGGATGTAATTGTCATCGAGGAATGACCTTCCTCCTGCTTGAGCCGGAATGTCGCCGTTTTCCTCGACGCTGTTGAAGAAGCACTGGATGTGAAAACAGCGCCATTTCTGTCGGCGTCCATGATACGCGATGCTACCGCAGCGGATTCCAGAGCTCGAGCTCGGAACGGCAGCGGAAGAGAAATAGCCGCTCCTCTTTCGCGGCTCCTCTTTACTTCAGCCCGCGGCAGGTTGTGCCGGTGAAGTAAGACGTAGCCCCAAAATGGACCCCTCCGACTGAGACGCAAACACATTCTGTGTTTTGCTCAGCAGCTGAGATCTATCAGCAGCATAAGCCATGCCTGACGATTAAAATCCCCCGTTTGCTCAAagcaataattaaaaaaaaacatcctacaTGCCTCCCCATGTAGAGCCCCTTCAGTGCGTCCTGCTGGAGTGACTGCCCTCTCTTCCCAAGGTTCTGCTTCATCCTCTCTCTGTACCCTTCTCCACCGACCACCCTACAGTAACTACCCATCACAATGCTGCTCCACCTGAGAATGGCCAACACCTGAGGTCCCATGCGTCCAGTGAGCACCGATTCAGACGGTCCTGCTCCTCCTGAAAACCTCTCTTGCCCCTACCCCCTCGCGGGCCCTCTGCCTGCCTCAGAGATGTCCGTGCTCCAGTCGCTGGGTCCAGTACAAAGCTGGCTCTGCCAGGAGCTTGAGAAGTGCGGGATTGATGCCATGATTTACACCCGCTACGTCCTCAGCCTTCTCCTGCATGACAGTTACGACTATGATCTGCAGGACCAGGAAAATGACATCTTCTTGGGCTGGGAGAAGGGAACTGGGAAGAAATGGGGCAAGAGTAAGAAGAAAGGAGGGACCGACTTGAGTCTTGAGGAAATGAAGAAGCAAGCTGCTGTGCAATGCCTCCGCTCTGCATCTGATGAAAACTCTGGAATTGAGAGCCTGGTTGAAGAGCTTTGCTCTAAACTAAAGGAcatccaaaacaaacagaaagAGGAAAAACAGATTCAAAAGAAATCTGATGGCTCTCAGTCTCCGGAGCGAGCTGAGTCCCCCTCTTCAAAGGACCAGGTGGAAATGTATTATGAAGCCTTTCCTCCTTTGTCAGAGAAACCTGTTTGTCTCCAAGAGATTATGACGGTGTGGAACAAAGCTAAGGCCTGCGCGTATTCAAGTTCATCATCTGCGGCCCCACAGACCAGCACAGACACCTCTTCCCCAAAAGATTGCAACAGTGAAGGTGAGGCTGCGAAGGAGCGAAACCTCGAAGCATGTGGTACCATCACTACTGTGACCAACGAGAGAGGCCAGCAACGACGAAgcaagagggagaaagaaaatcGATACCATGGTGGTGCAGGAGCAGAGGAGAAATCTACCGTCCACTCGAAGAGACAGACGAGACACAGATCTGAGGGCAAGTACAGACCCAGATCTTGGTCTTCTGGCTCTAGTGAGGCGGGCTCCAGCTCAAGTGGGAACCAGGGTGACTTGAAGTCATCCAGAAGCAAGGCAGTTAGAATAAGGCACAAATCCAGGGAGGCTGCAAAGAATAAGCGAACACGCAACAGTGGGCAGGTGAAGCTACAGGTGAAGTTAATCGACAGAGAGGAGCGAAGAAACACAGGAGGGAGCAGTAGCAGTGCCATTGGAGGCGCTGCCAAACAACCACAGCTTTACAAAAAGGGGAAGAGACCTCTGAAGGAGATTCGTAAAGATCCAGGCTGGAAGGAAGGGAAAGAGTCCGGAGTTGAGGCCAGaaacaaaaaggaatacatGGAGGAGCCACTTTGGTACACTGAGCCCATCACAGAGTATTTTGTACCTTTCAGCAGCAGACAAAGCAAGCTGGaaacaaaatacagaaacaagGTAGACTCTCCTGATGGCTTTGCTTTGTCAGCAGACATGGAGAGGCTGCCGGAGAGAATCCAGGGAATCTGCATTGCCAATGAGAGCTACCATAGAGCTTACCTAGCAGCAGGCTCCTTTGTAGATGGGCACTTTGTGGAAGGGCCTGGCGAAGCAGAAGATGAAACTGTTGAACTCACTGGGACCTCAAGCTGCCCTCAGCCAGAGGATAGTAGAGATTTAGATGACGAGCATCTGTCTGAATTCACTCACTTCTATGAAGTTGACATTTATCAATCCATATTGGATACTAGTGCCTCAGACTCTGTACAGGAAAGTCGAATCTTAAGCATGATTCGACAAAAAAGCAAAGAGCAAAGAGACGTTGAGGCAGAATGTTGTTTAGTGTTAGATGGCCTTGAGCAGCAAGGGAAAAGTGCAATACGGGCAGACTCGCAGGAAGCTTCGGGATCTATTGGATTCTTAATGGAGGATCTTGAAAACATGGCTCAAGTGTGGGGATGTTATTCGCCATCTACTTCAGAAGATATAGACGGAGAAAGCTTCGTAGGAGACTCTCCCGTTCGACTCTCCCCCCTTTTCGATAGTGTTTCGTTTACCCTGAGCACACTATCTGGAAATCTGGAGGAGCCACCTGTCCCTGAAGCCACCAGTGAACCGTCTGGTTTGAACTCGTCCTGCTTCTCTCTTTTTGAGCTGCAGTATGACAGCCCCACTTTTCCTTTTTCCCGTGACTCACTCACCATTGGTCATGAAAACAACACAGATTCTAGTAGCTGTCTTGACCCCCATCCGCATAAACAGTCTCGTTTGCTAATATGGACCAAAAATAGTGCCTTTGACGAAACTGAACACTGTTCGAACCTTTCAACACGAACTTGCAGTCCGTGGTCACATTCAGAGGAGACTCGTTCAGACAACGAGCAAGGAAATGTTCCAGCGGAGGATGCTGCTCAAATTGGCAACGAAGAGATTGTTTGTGtaatccctcctctctctggtACATATCTGGAGGAGGAAATCTTGGATTTTTTGCAAGAAGACCCTGGCCGTAAGTGTGAGGATGTCAGTATTAGTACAGCATCCAATCAGACCTTCACCAAAAAATCTAAATTGGAGTCCATTTGTGGTATAGCATTGGAAGAGGATAAGAGTGAACAGTACAGCACTGGCATGTTTTCGGACAACACAAACCAACACAGTGATGACTACAGCTCAGGGATAATAAAGGATATTTGGACTGCAATAGGAGATGACAAATCTGTAACGTCAAAGCAAGGAGCAGAAAAACCAAGCGAGGGGCTATTCTCCGATGAGTCAGGCAGTTACTGCTGCAGCTGTCTGGAAGTGCAGGCAAAGGGAGTTCCAATTCAGGGACCTCAGAAAAAAGCAGTGCAGCGCTCAGAGTATCACCTTTGGGAAGGCaagaaagaagaacaggacttagccaaaaacaAACTCTCCAAGGTAGATGGTGCCGGGGATTACATGACTCCGTCCAAGCCCTGGGACCTGAACTCTGACAAGGAGAATACATCATTCATCCTAGGAGGGGTGTATGGAGAGTTGAAGACACTAAGTGGTGATAAGAATTGGGCTGTTTTGCCGCCAAGTGACACCCAAGATAGCCTGCTGCAGTGTGCCGCTGCAGCTGCATCTGCATCTGCTTCCGCTTCCAGCTCAGATATGCTTACCATCACTGGCACAGATGTGTTCATGAACACTGGTAGCTGCTTTGCCCCTGGGCACAGGCCCCTGTGGAGGCCTCTTGTGTCCTTTGGGCAGAGTGACCAGGCCATTAAAGGAGGCGGAGATGGATTGAATAAGGGATTTTCTTTCATCTTCCATGAAGATTTGCTCGGATCTTACGGAGGCTTGCATGGTGAGGAGCAAGGTTTAGATTACCCGTTTGCATCCTTCAACCTGAACAATCCCTTCTCTCAAGTCCTCCATGTTGAGTGTTCGTTTGAGCCTGAGGACATGGCATCATTCAGTCCAGGGTTCAAGCCCAAATCTATCCTTTGCTCGGACTCTGAGAATGACGCCTTCCACCCACGAATATATGGCATCAACCGGACGCAGTACAGGGCAATTCGCATTTCCCCCAGGACTCATTTTCGACCAATCTCGGCCTCGGAGTTATCTCCTGGAGGAGTGAGTGATTCTGAGGCTGAAACTGACAAGGAGGAGATGAGTTTTCCCGTCCTGGCGCCGGTGGACGTCTTTGATGATCCTCAGGCAGACCTCAAACCTCTGGAGGAGGATGCAGAATGTGAGGGCCCTTATTACGGGAAGTCAGAACTGGAATCTGGTAAATTCTTACCCAGATTAAAGAAGTCTGGCATGGAGAAGAGTGCCCAGACCTCTCTGGATTCACAGGAGGGCTCCAGTACCCTCCTGCCAATTGCGGAGCAAGAGATATGCTTAGACTGCAAAACGGCAGCAGCTGCACCCACTGCAGGTGGACAGACAGATGTCTCTGTCGGCAAGATTCAAAAGGAGGAATCTTCAGGAGAAAAGCAGTCCTGCTTATCTGCACCAGCAGGTCAGATCCACAAGTATGGGATTGCTTATGACTTTGTTGGAGATGTGCCAGAGTTCCCTCTGTTAAATATAAGTGGACAGGGAGGAACTGGCACCCAGCAGGACGAGTGCTGGTGGCAGAGCACACTCTGTTCCCCCCTTTTCCCTGGATCTCAGTGTACAGGGAGCAGCAACATTTGAATACTCCAGTTTTGCAGAGGACACCTGTCATAGAGAGGAAACCTTCCTCTCCTTTTTGTGACTGGACCTCCTACCAGCAAAGATTCAGGGTCATCTCAGAGCTGGAAAAACCTAATGTAGGCTCATTTTCTGACACCCCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191049 lncRNA downstream 42161 6375998 ~ 6378372 (-) False tbc1d14
TU191040 lncRNA downstream 110638 6308898 ~ 6309895 (-) False sox19b
TU191020 lncRNA downstream 153950 6266151 ~ 6266583 (-) True G141613
TU191019 lncRNA downstream 154508 6265440 ~ 6266025 (-) True G141612
TU191007 lncRNA downstream 214803 6199308 ~ 6205730 (-) False gal3st4
TU191105 lncRNA upstream 23341 6455939 ~ 6511995 (-) True G141667
TU191122 lncRNA upstream 125700 6558298 ~ 6645212 (-) True G141683
TU191127 lncRNA upstream 144579 6577177 ~ 6578755 (-) True G141688
TU191192 lncRNA upstream 962561 7395159 ~ 7462473 (-) True G141741
TU191226 lncRNA upstream 1085667 7518265 ~ 7518467 (-) True G141773
XM_039823420.1 mRNA downstream 4076 6375972 ~ 6416457 (-) False tbc1d14
XM_039823419.1 mRNA downstream 4081 6375972 ~ 6416452 (-) True tbc1d14
XM_039823422.1 mRNA downstream 14486 6375972 ~ 6406047 (-) False tbc1d14
XM_039823423.1 mRNA downstream 25575 6375972 ~ 6394958 (-) False tbc1d14
XM_039821491.1 mRNA downstream 49433 6369686 ~ 6371100 (-) False LOC120572256
XM_039821466.1 mRNA upstream 19064 6451662 ~ 6452673 (-) True LOC120572244
XM_039823558.1 mRNA upstream 23409 6456007 ~ 6490226 (-) True LOC120573666
XM_039823557.1 mRNA upstream 23409 6456007 ~ 6481994 (-) False LOC120573666
XM_039823559.1 mRNA upstream 23409 6456007 ~ 6469533 (-) False LOC120573666
XM_039821832.1 mRNA upstream 82282 6514880 ~ 6546583 (-) True LOC120572494
TU191048 other downstream 49440 6353464 ~ 6371093 (-) True LOC120572256
TU191047 other downstream 49440 6369698 ~ 6371093 (-) False LOC120572256
XR_005641775.1 other downstream 83774 6336621 ~ 6336759 (-) True LOC120573735
XR_005641774.1 other downstream 84901 6335494 ~ 6335632 (-) True LOC120573734
XR_005641401.1 other downstream 193727 6221971 ~ 6226806 (-) False LOC120572220
TU191399 other upstream 1349346 7781944 ~ 7787595 (-) False fcer1g
unassigned_transcript_685 other upstream 1404623 7837221 ~ 7837294 (-) True trnar-ucu_15
TU191428 other upstream 1550339 7982937 ~ 7985950 (-) True G141913
XR_005641432.1 other upstream 1675049 8107647 ~ 8112684 (-) True LOC120572400
XR_005641433.1 other upstream 1675049 8107647 ~ 8111920 (-) False LOC120572400

Expression Profile