RNA id: unassigned_transcript_681


Basic Information

Item Value
RNA id unassigned_transcript_681
length 82
RNA type tRNA
GC content 0.63
exon number 1
gene id trnal-aag_6
representative True

Chromosome Information

Item Value
chromosome id NC_053125.1
NCBI id CM020922.1
chromosome length 39125861
location 5957051 ~ 5957132 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTAGCGTGGCCGAGCGGTCTAAGGCGCTGGATTAAGGCTCCAGTCTCTTCGGGggcgtgggttcaaatcccaccgCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU190757 lncRNA downstream 127583 5777783 ~ 5829468 (-) False G141439
TU190758 lncRNA downstream 127583 5777783 ~ 5829468 (-) False G141439
TU190724 lncRNA downstream 245335 5711434 ~ 5711716 (-) True G141416
TU190699 lncRNA downstream 372525 5584162 ~ 5584526 (-) True G141394
TU190676 lncRNA downstream 392667 5560031 ~ 5564384 (-) False cd99l2
TU190833 lncRNA upstream 12819 5969951 ~ 5970613 (-) True G141467
TU190834 lncRNA upstream 13803 5970935 ~ 5971387 (-) True G141468
TU190837 lncRNA upstream 32763 5989895 ~ 5992227 (-) True G141470
TU190999 lncRNA upstream 198920 6156052 ~ 6157413 (-) True G141601
TU191007 lncRNA upstream 242176 6199308 ~ 6205730 (-) False gal3st4
XM_039823468.1 mRNA downstream 1991 5946032 ~ 5955060 (-) True snapc2
XM_039823451.1 mRNA downstream 35180 5901924 ~ 5921871 (-) False LOC120573619
XM_039823450.1 mRNA downstream 35180 5901924 ~ 5921871 (-) False LOC120573619
XM_039823452.1 mRNA downstream 35180 5901924 ~ 5921871 (-) False LOC120573619
XM_039823449.1 mRNA downstream 35180 5901924 ~ 5921871 (-) True LOC120573619
XM_039823409.1 mRNA upstream 2308 5959440 ~ 5967428 (-) True vgf
XM_039823454.1 mRNA upstream 40986 5998118 ~ 6005218 (-) True serpine1
XM_039823010.1 mRNA upstream 201726 6158858 ~ 6185624 (-) True trappc14
XM_039823011.1 mRNA upstream 201726 6158858 ~ 6178209 (-) False trappc14
XM_039823013.1 mRNA upstream 220789 6177921 ~ 6205783 (-) False gal3st4
TU190759 other downstream 113905 5743559 ~ 5843146 (-) False G141439
TU190760 other downstream 113905 5743559 ~ 5843146 (-) False G141439
TU190756 other downstream 113905 5777783 ~ 5843146 (-) True G141439
TU190761 other downstream 174428 5743559 ~ 5782623 (-) False G141439
TU190708 other downstream 356589 5596958 ~ 5600462 (-) True G141400
unassigned_transcript_683 other upstream 71709 6028841 ~ 6028922 (-) True trnas-uga_22
XR_005641400.1 other upstream 264839 6221971 ~ 6231297 (-) False LOC120572220
XR_005641401.1 other upstream 264839 6221971 ~ 6226806 (-) False LOC120572220
XR_005641774.1 other upstream 378362 6335494 ~ 6335632 (-) True LOC120573734
XR_005641775.1 other upstream 379489 6336621 ~ 6336759 (-) True LOC120573735

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) trnal-aag_6 True 82 tRNA 0.63 1 NC_047606.1 9107852 ~ 9107933 (+)
mexican tetra (Astyanax mexicanus) trnal-aag_6 True 82 tRNA 0.65 1 NW_019172914.1 53480 ~ 53561 (+)