RNA id: trnal-aag_6


Basic Information

Item Value
RNA id trnal-aag_6
length 82
RNA type tRNA
GC content 0.65
exon number 1
gene id trnal-aag_6
representative True

Chromosome Information

Item Value
chromosome id NW_019172914.1
NCBI id APWO02000140.1
chromosome length 931882
location 53480 ~ 53561 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGTAGCgtggccgagcggtctaaggcgctggaTTAAGGCTCCAGTCTCTTCGGGggcgtgggttcgaatcccaccGCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002649692.1 lncRNA downstream 244792 298353 ~ 301587 (+) True LOC111191821
XR_002649698.1 lncRNA downstream 330868 384429 ~ 391232 (+) True LOC111191824
XR_002649694.1 lncRNA downstream 337691 391252 ~ 409186 (+) True LOC107197834
XR_002649695.1 lncRNA downstream 337691 391252 ~ 409186 (+) False LOC107197834
XR_002649696.1 lncRNA downstream 337691 391252 ~ 409186 (+) False LOC107197834
XM_022667893.1 mRNA upstream 11710 7777 ~ 41770 (+) True LOC103044777
XM_007257224.3 mRNA downstream 74897 128458 ~ 132755 (+) False LOC103046004
XM_022667888.1 mRNA downstream 74931 128492 ~ 132755 (+) False LOC103046004
XM_007257223.3 mRNA downstream 76476 130037 ~ 132755 (+) True LOC103046004
XM_007257226.3 mRNA downstream 182243 235804 ~ 250498 (+) True LOC103046818
XM_007257228.3 mRNA downstream 182243 235804 ~ 250498 (+) False LOC103046818
trnal-uag_4 other upstream 301 53098 ~ 53179 (+) True trnal-uag_4
trnal-uag_5 other downstream 7296 60857 ~ 60938 (+) True trnal-uag_5
trnal-aag_7 other downstream 7848 61409 ~ 61490 (+) True trnal-aag_7
trnal-aag_8 other downstream 10989 64550 ~ 64631 (+) True trnal-aag_8
TU456394 other downstream 213306 266867 ~ 267760 (+) True G331504
XR_002649688.1 other downstream 317929 371490 ~ 382784 (+) False LOC103021777