RNA id: TU207734


Basic Information

Item Value
RNA id TU207734
length 1707
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G153338
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9516013 ~ 9517740 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCACTGCTAAAGGCGACACTAGTTGTTGTGCTTCTGTCAGGAGGTCGATAGCCCGACAAAGGTTAATGTCCCATAGAAATGTGAAGGAGTGTGTgctttttgattttaacaaaaacatgtcaggaaaaagatgatttttgtcaAAACGCACAACCCTGAGGTCAGTGGGGGTAGGAATTACCCCTATACGAAAAACACACATTAGATCTCTTCCTAATAAATTTACCGGGCACACAGGTGAGAGCAAAAATGAGCATTTTGCTCTTCTCTCTGGGTCTGGATCTGTAGAATCTGTGTGCACACAAGTCACTGGAACGGTAAATTTCTCTGGCATTATCATACCACTTGCACTTCTAGAAAGAATTACCCTACcagaaagtttttgttttggaaACAATGATTTTTTCAAAACCGAATTTGTAGCCCCTGAATCAACCAAGAATTCTATTTCCCCTTCCGTATTGTCCCAACACTGTTGTAGGCAATTTTTATAACACATCTGATGAATACATAGCATAAGTAGGCATTTTCTCTTTAATTCCTTCTGTTCTATATGCTGTATTGCATCTAGTATGTTTTGCTTATTGTTTGGGGGTGGTGTAGATGTTTGTGGTATGCAGGaaagcatgtcttcattgcaagcatgtgtatctgtgtgtgtgtgcatgttaccCTCCTTAACAGGCGCACTCGTGTCATCCAGTCCGTCCATTCCACCCGTCTTTCCATCCCCCACCGCCTGTCAATCTGCAAACTGCTGGGGGTCGTTGCGCTGTCCCTTGGACGAGTCCTTCTTGGGGTGGGGACATTCGTAGGCCCAATGCCCTTTCTCGCCACAGTTGTAGCAAGTGTCTTTGTCCACTATCGGTGTGTTGCCACGGCCCCTGCCTCTGCCTCTGCCTTTTCCTCTGCCCGCATTCCTTCTTTCTTGAGACATTGCTGCCACAGTTTTTATGAGGGTTAACTGTGCAGCATCactgttttgttgtcttttcttctccgtCTTGTCTCTTGTGCTGGTCAGGATTTTCTCAGCATGTCTAGCATGTCTAACAATCTCCATCAGGGCTGAATCGGGCAGTCCAATGCAGGTTTTGTCCACTTCAGCTCGTATGTCAGGGAGCAGCCCACTCAAAaacacgtttttgaaatgagctTCCCAAAGTTCAATCACTGCTCCAGCGGCAGTGGTGCGAGCGATGCCGATGTGTCTATCAAAAGTCTCAGAAAGCCGGTGCTGGAAGTCCTCCACCGTTTCGCCTTTATACTGCCTGGTGTTTGTCACACGTGTCATGTCGATTCTGTCTGGAAACACGGTCTCTAGTCCGGTGGAGAGATCATCCAGCAGGTCATTGTAGCCATCATTTGCTCTATTTGCGAGATTTGGATGGAGAATGACTGGATCATTGGTTGGGTCTTCGGGGAGAAGGTGTCGGATCTTTGCATACTCCATAGGCCCCAGGTTTACCATCAGAAGACGTCGTATTTCTGGAACAGTGGGCAGAAAAGTCTCAATGAATGCCTGAAGGGCTATGGTAAATTGTGCACCAGAGTTTTTGCACGGGGGAAGGTGGCTTGTTGCTTGTCTAATGTCTAATTCAGTCCAGGCCCTATACACCAGGCCTATTCCCCCTCCTTGTGTAGGGACTTGAATCATGGGAAATGCATCAGCTTCATCTCCGTCCTCATCAGTTTCCTCTGTGAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207713 lncRNA upstream 61830 9429775 ~ 9454183 (+) True G153322
TU207684 lncRNA upstream 76701 9342645 ~ 9439312 (+) False G153301
TU207685 lncRNA upstream 76701 9391573 ~ 9439312 (+) True G153301
TU207690 lncRNA upstream 115716 9317356 ~ 9400297 (+) True G153306
TU207671 lncRNA upstream 273297 9188438 ~ 9242716 (+) True G153291
TU207745 lncRNA downstream 24439 9542179 ~ 9542934 (+) True G153345
TU207740 lncRNA downstream 119089 9636829 ~ 9637969 (+) True G153341
TU207761 lncRNA downstream 136583 9654323 ~ 9678077 (+) True G153359
TU207736 lncRNA downstream 140608 9658348 ~ 9687829 (+) True G153340
TU207737 lncRNA downstream 155758 9673498 ~ 9715062 (+) False G153340
XM_039825618.1 mRNA upstream 473968 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 546968 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 361562 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 421223 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 422783 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 423149 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 475049 9992789 ~ 10027725 (+) False LOC120574577
unassigned_transcript_736 other upstream 330687 9184479 ~ 9185326 (+) True LOC120574631
unassigned_transcript_735 other upstream 342702 9172417 ~ 9173311 (+) False LOC120574342
unassigned_transcript_734 other upstream 344100 9171332 ~ 9171913 (+) True LOC120574341
unassigned_transcript_733 other upstream 359193 9153736 ~ 9156820 (+) True LOC120574340
unassigned_transcript_732 other upstream 367289 9148184 ~ 9148724 (+) True LOC120574643
unassigned_transcript_822 other downstream 232878 9750618 ~ 9751056 (+) True LOC120574616
unassigned_transcript_823 other downstream 234199 9751939 ~ 9752601 (+) True LOC120574628
TU207814 other downstream 234308 9752048 ~ 9752558 (+) False LOC120574628
unassigned_transcript_824 other downstream 235977 9753717 ~ 9754263 (+) True LOC120574396
unassigned_transcript_825 other downstream 238749 9756489 ~ 9756908 (+) True LOC120574655

Expression Profile