asphd1 (asphd1,LOC103374850,LOC102795844,LOC102314131)


Basic Information

Item Value
gene id asphd1
gene name asphd1,LOC103374850,LOC102795844,LOC102314131
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9036901 ~ 9042045 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU207379
GGGTAAACAGTGGAGGAAGGAAACATTGTCAAGAACgaatcatttatttctcattGTCTCATAGGTCAGACTGAACGATCACTCTGCTATACAGAAGCCTCATCTCTTCTTCTTGCCAGATGTCCCAAGTGTTCCTTTCTTCCCACGAGATGCTCATCGACATGACATTGAGGTCCTGGAAGCCAACTACTCTGTAGTGTTGGCAGAATTCAAGGCTGTATATCAGAGGGGCATCGACTCAAAACTAGGCTGGACCTGTCTGGGACCAAAGGGCCAGGCAGTGTTTCCTTTGTACAGTGCAGGTGTCTCTGTGGCAGGAAACTGTCGGTCCTGTCCCTGCACCTACCGGACACTTCTATCACTACGTACGTTCATAAGCAGCAACTCATTGGGATCTGCTGGATTTTGGCTGTTGGGACCCGGAGCAACGTTGGGGAGCTCATATGGACCCACCAATACGCGCCTACGTTGTCACCTTGGTCTGCAGACTCCACCCCTGTGTGAGCTGGTGGTGGGAGGGGAGCCTCAGTGCTGGTCAGAAGGACACTGCCTCCTGGTTGATGACTCGTTCCTCCACACTGTCTCCCACAAGGGGCCTCCAGATTCTGGACCCCGAGTAATTTTGAGTGTGGACCTCTGGCATCCAAATgtggctgcagcagagagacaAGCTTTGGACTTCATGTTCAACCCCGACTTCTGAATTTGCGCCTGCCAATACTACCAATATACAACATGCAGGGATGCCTTACCTTAGCCCTGCTTGTTGTGGGTCCTGCATCTCATTCCAGTCAAGAATCACTGTGTGAATCTGCTCTAAGAATTACGCAAGCCATTAGCCATGCTTTCAAGTGGTTTATGGATAAAGTTAGTCAGTGCTAAATGCTATACAATTTGGATGCAAACTACAAACTAAATCACTTGAAAGCACAATGAGATCTAACCTAAGAGGAGCAGATGGTGTTAACTATTATAAATCTATCTTGACACAATGCTAGTGAATGCTATTTTTGCATGTGAAACCTATCTGTCCTGATTACTGGACTTTGTTTTGAGCTGATGCATGTGCACGAGTGTACGAGTCAGCCTGGGatgctttattttgaaatttaggtagataacaaaaaaaactgtgaaaacatGAAAAGTATATAAATGcaaatttctatttatttttgttttccaaaatgaatGCCAAGATCATATTAACTTTTACATA
>XM_039825618.1
CATTTTGTCTGTAAGCGCTGGAGGAGCTGTCCACCAGCACGGTGCAGAAGTGTGTCCGACACAGCGCTGAACGGTATATCAAGTGTCTCACAAATTTAAAGGATGCACTGGTCAATGAACACACTCCCTTTGCCTCCATATGTTGAGCTGGGTGTCCATTCACTGAGTGGCCTTCTCTGGACTCTACTGCTACTCTTTCTGTGGCACTGTTATCGGATGGGCTCCGACCTGCCAATCCCAGGCCATGGACACGCTGGAAAGCTTAAGTCTGGCTCAAGGCGGTCTATGATGTCCCGTGGCGGTAGCTGTGCTGGAACAAAGTGTAGTGCACGATCCAAACTGTCAAGAAGTGATCAAATTACTCCCTTTATTTCCATGGAaacagaggaggatgaggatcaGGGACAGGGCTACCTCACCCCAGTGCTGAGTCATGCCTTGTTCCCAGCCCAGGCATCTGCTGAAGCCAAGAAACTGTACGCAGCACTGCAAGAGTATGCCAAGCGCTACAGTTGGGTGGGCATGGGCCGCATTCATAAGGGCCTCCGTGAGCAGGTCAGACTGAACGATCACTCTGCTATACAGAAGCCTCATCTCTTCTTCTTGCCAGATGTCCCAAGTGTTCCTTTCTTCCCACGAGATGCTCATCGACATGACATTGAGGTCCTGGAAGCCAACTACTCTGTAGTGTTGGCAGAATTCAAGGCTGTATATCAGAGGGGCATCGACTCAAAACTAGGCTGGACCTGTCTGGGACCAAAGGGCCAGGCAGTGTTTCCTTTGTACAGTGCAGGTGTCTCTGTGGCAGGAAACTGTCGGTCCTGTCCCTGCACCTACCGGACACTTCTATCACTACGTACGTTCATAAGCAGCAACTCATTGGGATCTGCTGGATTTTGGCTGTTGGGACCCGGAGCAACGTTGGGGAGCTCATATGGACCCACCAATACGCGCCTACGTTGTCACCTTGGTCTGCAGACTCCACCCCTGTGTGAGCTGGTGGTGGGAGGGGAGCCTCAGTGCTGGTCAGAAGGACACTGCCTCCTGGTTGATGACTCGTTCCTCCACACTGTCTCCCACAAGGGGCCTCCAGATTCTGGACCCCGAGTAATTTTGAGTGTGGACCTCTGGCATCCAAATgtggctgcagcagagagacaAGCTTTGGACTTCATGTTCAACCCCGACTTCTGAATTTGCGCCTGCCAATACTACCAATATACAACATGCAGGGATGCCTTACCTTAGCCCTGCTTGTTGTGGGTCCTGCATCTCATTCCAGTCAAGAATCACTGTGTGAATCTGCTCTAAGAATTACGCAAGCCATTAGCCATGCTTTCAAGTGGTTTATGGATAAAGTTAGTCAGTGCTAAATGCTATACAATTTGGATGCAAACTACAAACTAAATCACTTGAAAGCACAATGAGATCTAACCTAAGAGGAGCAGATGGTGTTAACTATTATAAATCTATCTTGACACAATGCTAGTGAATGCTATTTTTGCATGTGAAACCTATCTGTCCTGATTACTGGACTTTGTTTTGAGCTGATGCATGTGCACGAGTGTACGAGTCAGCCTGGGatgctttattttgaaatttaggtagataacaaaaaaaactgtgaaaacatGAAAAGTATATAAATGcaaatttctatttatttttgttttccaaaatgaatGCCAAGATCATATTAACTTTTACATACTGTGGTTATTCTTTCTATTCTTATTACCTCCATGTATGCTTGTATGTTTCTATCTgtaaatctatttttcatttattaatatatttggtTTACATCACATGCATACATCAGGTTTGTTGTCAATTCTGTCTTTCCTGGAAtccagataataaataaataacaaataaatcag

Function

symbol description
asphd1 Predicted to enable dioxygenase activity. Acts upstream of or within brain development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in brain. Orthologous to human ASPHD1 (aspartate beta-hydroxylase domain containing 1).

NR:

description
aspartate beta-hydroxylase domain-containing protein 2-like

GO:

id name namespace
GO:0018193 peptidyl-amino acid modification biological_process
GO:0007420 brain development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU207379 False 1219 lncRNA 0.45 4 9039691 9041872
XM_039825618.1 True 1883 mRNA 0.46 6 9036901 9042045

Neighbor

gene id symbol gene type direction distance location
pold1 pold1 coding upstream 141993 8876256 ~ 8894908 (+)
aspdh aspdh coding upstream 170372 8863841 ~ 8866529 (+)
hspbp1 hspbp1,LOC102791397 coding upstream 176402 8856478 ~ 8860499 (+)
kcnj12b LOC103375016,LOC104930358,LOC104942720 coding upstream 191024 8839379 ~ 8845877 (+)
LOC120574270 NA coding upstream 202791 8817737 ~ 8834110 (+)
LOC120574330 NA coding downstream 19271 9061316 ~ 9067135 (+)
LOC120574580 NA coding downstream 39802 9081847 ~ 9086215 (+)
LOC120574615 NA coding downstream 59140 9101185 ~ 9101623 (+)
LOC120574625 LOC102776372 coding downstream 60552 9102597 ~ 9103168 (+)
LOC120574621 NA coding downstream 65905 9107950 ~ 9108473 (+)
G153067 NA non-coding upstream 15406 8957039 ~ 9021495 (+)
G153088 kctd13,LOC106600645,LOC101075733 non-coding upstream 22654 9011238 ~ 9014247 (+)
G153084 NA non-coding upstream 28133 9004828 ~ 9008768 (+)
G153058 LOC104930346,LOC102232733,LOC102793338,LOC101069507,LOC103469087 non-coding upstream 98096 8924587 ~ 8938805 (+)
G153049 NA non-coding upstream 133055 8895639 ~ 8903846 (+)
G153239 NA non-coding downstream 1472 9043517 ~ 9046161 (+)
G153254 NA non-coding downstream 78413 9120458 ~ 9120758 (+)
G153261 NA non-coding downstream 97421 9139466 ~ 9139797 (+)
G153291 NA non-coding downstream 146393 9188438 ~ 9242716 (+)
G153306 NA non-coding downstream 275311 9317356 ~ 9400297 (+)
eps8l1a eps8l1 other upstream 67856 8959248 ~ 8969045 (+)
G153016 NA other upstream 274319 8757246 ~ 8762582 (+)
ypel3 ypela,ypel3,LOC106600728,LOC103040367,LOC105012807,LOC104942727,LOC108411043,LOC103393221,LOC107686999 other upstream 335130 8696899 ~ 8701771 (+)
mapk3 mapk3,LOC104942729 other upstream 352136 8666470 ~ 8684765 (+)
mcrip1 mcrip1 other upstream 587596 8445420 ~ 8449305 (+)
G153245 NA other downstream 31826 9073871 ~ 9116603 (+)
LOC120574336 NA other downstream 80561 9122606 ~ 9123105 (+)
LOC120574342 LOC102776372 other downstream 81532 9123577 ~ 9173311 (+)
LOC120574337 NA other downstream 93771 9135816 ~ 9136378 (+)
LOC120574339 NA other downstream 98277 9140322 ~ 9140992 (+)

Expression


Co-expression Network