RNA id: TU207745



Basic Information


Item Value
RNA id TU207745
length 461
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G153345
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9542179 ~ 9542934 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gttactgtggctctctggcacagtaatacacagcagtGTCTTCAGGCTGCACATTCTGTCCATTTAGAGTCACTGTCTTGCTGGAAGTCTCTAAGTCgatactgaacttgttcttcaggGAATCTTTGTAGTATGAAGCTCCAGTATGTTTCATTccaatccactccagtcctttccctgcaggctgtctgatccaagctgtgtagtagctgctgagagaataagagacctgacaggtgatggtcagacgttgacctggctgcacagtcacagaggctggctgggtcaactgttcacacttcacacATCCAGctgccaacagcagcagcagagctccaGAGAACATGGTTTATGTTGAAACTGACGTGCTGTGAACTCCACTGACAGCctgatgtgatgtttttataGCTGAGAAACAAGGAAGGTCACTGAGTTTGCATAAAATCAAACATATGAAGCAT

Function


GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207734 lncRNA upstream 24439 9516013 ~ 9517740 (+) True G153338
TU207713 lncRNA upstream 87996 9429775 ~ 9454183 (+) True G153322
TU207684 lncRNA upstream 102867 9342645 ~ 9439312 (+) False G153301
TU207685 lncRNA upstream 102867 9391573 ~ 9439312 (+) True G153301
TU207690 lncRNA upstream 141882 9317356 ~ 9400297 (+) True G153306
TU207740 lncRNA downstream 93895 9636829 ~ 9637969 (+) True G153341
TU207761 lncRNA downstream 111389 9654323 ~ 9678077 (+) True G153359
TU207736 lncRNA downstream 115414 9658348 ~ 9687829 (+) True G153340
TU207737 lncRNA downstream 130564 9673498 ~ 9715062 (+) False G153340
XR_005641881.1 lncRNA downstream 320051 9862985 ~ 9864890 (+) True LOC120574665
XM_039825618.1 mRNA upstream 500134 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 573134 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 336368 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 396029 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 397589 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 397955 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 449855 9992789 ~ 10027725 (+) False LOC120574577
unassigned_transcript_736 other upstream 356853 9184479 ~ 9185326 (+) True LOC120574631
unassigned_transcript_735 other upstream 368868 9172417 ~ 9173311 (+) False LOC120574342
unassigned_transcript_734 other upstream 370266 9171332 ~ 9171913 (+) True LOC120574341
unassigned_transcript_733 other upstream 385359 9153736 ~ 9156820 (+) True LOC120574340
unassigned_transcript_732 other upstream 393455 9148184 ~ 9148724 (+) True LOC120574643
unassigned_transcript_822 other downstream 207684 9750618 ~ 9751056 (+) True LOC120574616
unassigned_transcript_823 other downstream 209005 9751939 ~ 9752601 (+) True LOC120574628
TU207814 other downstream 209114 9752048 ~ 9752558 (+) False LOC120574628
unassigned_transcript_824 other downstream 210783 9753717 ~ 9754263 (+) True LOC120574396
unassigned_transcript_825 other downstream 213555 9756489 ~ 9756908 (+) True LOC120574655

Expression Profile