RNA id: TU207813


Basic Information

Item Value
RNA id TU207813
length 451
RNA type TUCP
GC content 0.47
exon number 2
gene id LOC120574632
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9800732 ~ 9840628 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agagaacagtggacacacagtttaacatgatggactataggacaggactgctgcttttaactctctgctgggcaggtgttgatggtcagactctgacagaatctgaaccagcgATTAAAAGACGtggagaatcccacagattgacctgtacaacatctggattCACATTCAGTGGCtacagcatgcactgggtcagacaggctcctggaaaaggactggagtggattgcTTATATCAGATATGATAGTGCTAGCATCTACTACTCTCAGTCAGTTCAAGGCCGGTTTACCGtctccagagacaacagcagagagcagctgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtgctcgacacccacagtgactggagttggttgagcagctgtacaaaatccTACAGTACTCATTCTTTCAGGCTGGTAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207737 lncRNA upstream 85670 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 112903 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 122655 9654323 ~ 9678077 (+) True G153359
TU207740 lncRNA upstream 162763 9636829 ~ 9637969 (+) True G153341
TU207745 lncRNA upstream 257798 9542179 ~ 9542934 (+) True G153345
XR_005641881.1 lncRNA downstream 22357 9862985 ~ 9864890 (+) True LOC120574665
TU207833 lncRNA downstream 31693 9872321 ~ 9878863 (+) True G153415
TU207847 lncRNA downstream 80924 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 85510 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 106943 9947571 ~ 9950872 (+) False LOC120574664
XM_039825618.1 mRNA upstream 758687 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 831687 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 38674 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 98335 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 99895 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 100261 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 152161 9992789 ~ 10027725 (+) False LOC120574577
TU207810 other upstream 9798 9790489 ~ 9790934 (+) True G153393
TU207802 other upstream 10960 9789206 ~ 9789772 (+) True G153385
TU207818 other upstream 18167 9766470 ~ 9782565 (+) True G153401
TU207803 other upstream 29607 9770635 ~ 9771125 (+) False LOC120574397
TU207826 other upstream 31481 9768638 ~ 9769251 (+) True G153409
unassigned_transcript_832 other downstream 648 9841276 ~ 9842959 (+) True LOC120574406
unassigned_transcript_833 other downstream 9637 9850265 ~ 9850879 (+) True LOC120574590
unassigned_transcript_834 other downstream 18169 9858797 ~ 9859499 (+) True LOC120574644
unassigned_transcript_835 other downstream 19427 9860055 ~ 9872662 (+) True LOC120574407
TU207835 other downstream 36193 9876821 ~ 9877328 (+) True LOC120574408

Expression Profile