RNA id: unassigned_transcript_823


Basic Information

Item Value
RNA id unassigned_transcript_823
length 574
RNA type V_gene_segment
GC content 0.45
exon number 2
gene id LOC120574628
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9751939 ~ 9752601 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAACGCATATTTTCACTCTGCAGATATAATAACACTGAACAAACTCTTCTATTGACTCCAGTTAGACCAACATTGATGCTTCATATGTTTGATTTTATGCAAACTCAGTGACCTTCCTTGTTTCTCAGCtataaaaacatcacatcagGCTGTCAGTGGAGTTCACAGCACGTCAGTTTCAACATAAACCATGTTCTCtggagctctgctgctgctgttggcagCTGGATgtgtgaagtgtgaacagttgacccagccagcctctgtgactgtgcagccaggtcaacgtctgaccatcacctgtcaggtctcttattctctcagcagctactacacagcttggatcagacagcctgcagggaaaggactggagtggattggATGGAAATATACTGGAGGTTCACACTACAAAGATtcactgaagaacaagttcagtatTGACTTAGAGACTTCCAGCAAGACAGTGACTCTAAATGGACAGAATGTGCAGCCTGAAGACactgctgtgtattactgtgccagagagccacagtaacacaaaccatcagtagacctgaacaaaaacccctcaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207737 lncRNA upstream 36877 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 64110 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 73862 9654323 ~ 9678077 (+) True G153359
TU207740 lncRNA upstream 113970 9636829 ~ 9637969 (+) True G153341
TU207745 lncRNA upstream 209005 9542179 ~ 9542934 (+) True G153345
XR_005641881.1 lncRNA downstream 110384 9862985 ~ 9864890 (+) True LOC120574665
TU207833 lncRNA downstream 119720 9872321 ~ 9878863 (+) True G153415
TU207847 lncRNA downstream 168951 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 173537 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 194970 9947571 ~ 9950872 (+) False LOC120574664
XM_039825618.1 mRNA upstream 709894 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 782894 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 126701 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 186362 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 187922 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 188288 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 240188 9992789 ~ 10027725 (+) False LOC120574577
unassigned_transcript_822 other upstream 883 9750618 ~ 9751056 (+) True LOC120574616
unassigned_transcript_736 other upstream 566613 9184479 ~ 9185326 (+) True LOC120574631
unassigned_transcript_735 other upstream 578628 9172417 ~ 9173311 (+) False LOC120574342
unassigned_transcript_734 other upstream 580026 9171332 ~ 9171913 (+) True LOC120574341
unassigned_transcript_733 other upstream 595119 9153736 ~ 9156820 (+) True LOC120574340
unassigned_transcript_824 other downstream 1116 9753717 ~ 9754263 (+) True LOC120574396
unassigned_transcript_825 other downstream 3888 9756489 ~ 9756908 (+) True LOC120574655
unassigned_transcript_826 other downstream 6066 9758667 ~ 9771134 (+) True LOC120574397
unassigned_transcript_827 other downstream 7024 9759625 ~ 9760180 (+) True LOC120574606
TU207825 other downstream 12728 9765329 ~ 9765824 (+) True G153408

Expression Profile