RNA id: TU207833


Basic Information

Item Value
RNA id TU207833
length 386
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G153415
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9872321 ~ 9878863 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgaagtgtgaacagtTGACCCAGCCAGCCTCTGTGACTGTGCAGCCAGGTCAACGTCTGACCATCACCTGTCAGGTCTCTTATTCTCTCAGCAGctactacacagcttggatcagacagcctgcagggaaaggactggagtggattggAATGGCAGCAGTTGGATCCACTACATGCTTAAAAGATTCACTTaagaacaagttcagtatcAGCTTGGACTCTTCCAGCAAGACAGTGACTCTAAATGGACAGAATGTGCAGCCTGAAGACactgctgtgtattactgtgccagatacacacagtaacacaaaccatcagtagacctgaacaaaaacccctcagagcctgaacacttgtaacatgaagccaccagaggaggagcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641881.1 lncRNA upstream 7431 9862985 ~ 9864890 (+) True LOC120574665
TU207737 lncRNA upstream 157259 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 184492 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 194244 9654323 ~ 9678077 (+) True G153359
TU207740 lncRNA upstream 234352 9636829 ~ 9637969 (+) True G153341
TU207847 lncRNA downstream 42689 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 47275 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 68708 9947571 ~ 9950872 (+) False LOC120574664
XR_005641880.1 lncRNA downstream 69744 9948607 ~ 9950872 (+) False LOC120574664
TU207800 lncRNA downstream 71745 9950608 ~ 9953355 (+) True LOC120574664
XM_039825618.1 mRNA upstream 830276 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 903276 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 439 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 60100 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 61660 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 62026 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 113926 9992789 ~ 10027725 (+) False LOC120574577
unassigned_transcript_834 other upstream 12822 9858797 ~ 9859499 (+) True LOC120574644
unassigned_transcript_833 other upstream 21442 9850265 ~ 9850879 (+) True LOC120574590
unassigned_transcript_832 other upstream 29362 9841276 ~ 9842959 (+) True LOC120574406
TU207813 other upstream 31693 9800732 ~ 9840628 (+) True LOC120574632
unassigned_transcript_831 other upstream 31699 9840078 ~ 9840622 (+) False LOC120574632
unassigned_transcript_838 other downstream 14283 9893146 ~ 9893584 (+) True LOC120574608
unassigned_transcript_839 other downstream 16426 9895289 ~ 9895849 (+) True LOC120574613
TU207840 other downstream 27131 9905994 ~ 9911216 (+) False LOC120574588
TU207841 other downstream 27131 9905994 ~ 9911266 (+) True LOC120574588
unassigned_transcript_840 other downstream 27132 9905995 ~ 9906547 (+) False LOC120574588

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) LOC103027076 True 479 V_segment 0.44 2 NW_019172441.1 82398 ~ 82963 (+)