RNA id: TU207835


Basic Information

Item Value
RNA id TU207835
length 421
RNA type TUCP
GC content 0.47
exon number 2
gene id LOC120574408
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9876821 ~ 9877451 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gatatcttcacctctacttatctgagtgcagagaggaggacagagaacagtggacacacagtttaacatgatggactataggacaggactgctgcttttaactctctgctgggcaggtgttgatggtcagactctgacagaatctgaGCCATCAgttaaaagacctggagaatcccacagattgacctgtacaacatctggattGTCATTCAGTAGCAGCTGGATGGCCtggatcagacaggctcctggaaaaggactggagtgggttGCTACTATCAGTTATACCAGTGGCAGCATCTACTACTCTCAGTCAGTTCAAGGCCGGTTTACCAtctccagagacaacagcagagagcagctgtatctgcagatgaacagtctgaagactgaagattctgctgtttattattgtgctcgatac

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko05140 Leishmaniasis
ko05310 Asthma
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005641881.1 lncRNA upstream 11931 9862985 ~ 9864890 (+) True LOC120574665
TU207737 lncRNA upstream 161759 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 188992 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 198744 9654323 ~ 9678077 (+) True G153359
TU207740 lncRNA upstream 238852 9636829 ~ 9637969 (+) True G153341
TU207847 lncRNA downstream 44224 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 48810 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 70243 9947571 ~ 9950872 (+) False LOC120574664
XR_005641880.1 lncRNA downstream 71279 9948607 ~ 9950872 (+) False LOC120574664
TU207800 lncRNA downstream 73280 9950608 ~ 9953355 (+) True LOC120574664
XM_039825618.1 mRNA upstream 834776 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 907776 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 1974 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 61635 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 63195 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 63561 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 115461 9992789 ~ 10027725 (+) False LOC120574577
unassigned_transcript_835 other upstream 4159 9860055 ~ 9872662 (+) True LOC120574407
unassigned_transcript_834 other upstream 17322 9858797 ~ 9859499 (+) True LOC120574644
unassigned_transcript_833 other upstream 25942 9850265 ~ 9850879 (+) True LOC120574590
unassigned_transcript_832 other upstream 33862 9841276 ~ 9842959 (+) True LOC120574406
TU207813 other upstream 36193 9800732 ~ 9840628 (+) True LOC120574632
unassigned_transcript_837 other downstream 1004 9878332 ~ 9878785 (+) True LOC120574612
unassigned_transcript_838 other downstream 15818 9893146 ~ 9893584 (+) True LOC120574608
unassigned_transcript_839 other downstream 17961 9895289 ~ 9895849 (+) True LOC120574613
TU207840 other downstream 28666 9905994 ~ 9911216 (+) False LOC120574588
TU207841 other downstream 28666 9905994 ~ 9911266 (+) True LOC120574588

Expression Profile