RNA id: TU207840


Basic Information

Item Value
RNA id TU207840
length 426
RNA type TUCP
GC content 0.45
exon number 3
gene id LOC120574588
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9905994 ~ 9911266 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAACAGCTGACAGTTTCATACATCTCAGAAAGACTTTGATCAGACATCAGTTCATCGCAGAGTTTGATGGGAAATATGATTGTCTGGGGTTTATTTTTTGTAGTTGCTATTAATGGAGTTTGGAGTGAGATCAAACTGGACCAGTCTCCCTCTCAGGTGAAAAGACCTGGAGAGACAGTGAAGATGTCATGTATCATATCTGGTTATAGCATGACAAGCTACAGTATCAACTGGATACGACAGAGACCAGGAGAAGCTCTGGAGTGGATTGGGTGGATAAACACTAATACAAACACTCCGAGCTATGCCAGCTCCTTTCAGAGCCGTTTCAGTTTTACTCAAGATGTTCCCAGCAGCACTCAGTACCTCGAGGTCCAGagcctgacagcagcagattctgctgtttacttCTGTGCTCGAGAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207833 lncRNA upstream 27131 9872321 ~ 9878863 (+) True G153415
XR_005641881.1 lncRNA upstream 41104 9862985 ~ 9864890 (+) True LOC120574665
TU207737 lncRNA upstream 190932 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 218165 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 227917 9654323 ~ 9678077 (+) True G153359
TU207847 lncRNA downstream 10336 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 14922 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 36355 9947571 ~ 9950872 (+) False LOC120574664
XR_005641880.1 lncRNA downstream 37391 9948607 ~ 9950872 (+) False LOC120574664
TU207800 lncRNA downstream 39392 9950608 ~ 9953355 (+) True LOC120574664
XM_039824667.1 mRNA upstream 18027 9879302 ~ 9887967 (+) True LOC120574409
XM_039825618.1 mRNA upstream 863949 9036901 ~ 9042045 (+) True asphd1
XM_039823791.1 mRNA upstream 936950 8959248 ~ 8969044 (+) True eps8l1a
XM_039824673.1 mRNA downstream 27747 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 29307 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 29673 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 81573 9992789 ~ 10027725 (+) False LOC120574577
XM_039824995.1 mRNA downstream 100131 10011347 ~ 10027725 (+) False LOC120574577
unassigned_transcript_839 other upstream 10145 9895289 ~ 9895849 (+) True LOC120574613
unassigned_transcript_838 other upstream 12410 9893146 ~ 9893584 (+) True LOC120574608
unassigned_transcript_837 other upstream 27209 9878332 ~ 9878785 (+) True LOC120574612
unassigned_transcript_836 other upstream 28543 9876888 ~ 9877451 (+) False LOC120574408
TU207835 other upstream 28666 9876821 ~ 9877328 (+) True LOC120574408
TU207815 other downstream 8319 9919535 ~ 9920004 (+) True G153398
unassigned_transcript_842 other downstream 9115 9920331 ~ 9920812 (+) True LOC120574623
unassigned_transcript_843 other downstream 19936 9931152 ~ 9934195 (+) True LOC120574413
unassigned_transcript_844 other downstream 24455 9935671 ~ 9936281 (+) True LOC120574414
unassigned_transcript_845 other downstream 26803 9938019 ~ 9938604 (+) True LOC120574658

Expression Profile