RNA id: TU209761



Basic Information


Item Value
RNA id TU209761
length 672
lncRNA type sense_over
GC content 0.43
exon number 2
gene id G154777
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 14049831 ~ 14056966 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAGCAACAAACACATagtagCTTTATTGCGTCAAAAAGACGCATAATTAATGATGAAGCTACATGCTCAAATTAATGTCTATGACTAGTAGGCTGATTAAAAAAGGCTTTAAGCCGGTATTTCATAATCAATTCATTTTATTACAAAATAGGAATATTGAAATATATCACAAGATGAGAACATGATACATTGAAAACCTCCATTCAATACAAATAGTAGGTCTACATAACCAAGTTCGCAACGCAAACAAGGACAAAATACGGACATTATGTGAGGTTCAAAAACATCACTGTGATGCAACTGAGGAAACATAAGTCCTTGGCAATTTAAACGTGCATCCCATCCAGGATTCTTGAATCCCACCTCTGGTCCGTGGGTGAGGATGAAAACAAACGTGACGTCCCTAATGCACCTCGAGTGTGTGAGATTCCTCCAGTCAGTAATCCAGACTTCCGTTTCATGATGCTTTTGGCACGTCAAACATGCACAGACTTTTGTATTTCTGCAGCAGCTGGTTCTTGGTGCGGACCTGCTCCCGCAGCGTagccagctgctgctgctgctccagcGGACTGCTGTCTACCCCGGGCATGTTAGATATCTGCTCCCGAGCCTCCTGGATCTTTGTCTTCAGCTTGGCCAGTTCTTGGTGAACATCCTGGCTGTCCTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005641994.1 lncRNA upstream 95108 13946606 ~ 13954723 (+) True LOC120575454
TU209634 lncRNA upstream 357659 13656015 ~ 13692172 (+) False vasnb
TU209616 lncRNA upstream 457197 13589517 ~ 13592634 (+) True G154682
TU209595 lncRNA upstream 555970 13492585 ~ 13493861 (+) True G154661
TU209556 lncRNA upstream 565113 13484039 ~ 13484718 (+) True G154639
XR_005641955.1 lncRNA downstream 50815 14107781 ~ 14241105 (+) False LOC120575155
XR_005641957.1 lncRNA downstream 50860 14107826 ~ 14241105 (+) False LOC120575155
XR_005641954.1 lncRNA downstream 126371 14183337 ~ 14241105 (+) True LOC120575155
XR_005641953.1 lncRNA downstream 126371 14183337 ~ 14241105 (+) False LOC120575155
TU209772 lncRNA downstream 126383 14183349 ~ 14241100 (+) False LOC120575155
XM_039825313.1 mRNA upstream 394 14048086 ~ 14049437 (+) True LOC120574849
XM_039825900.1 mRNA upstream 49155 13996902 ~ 14000676 (+) True LOC120575215
XM_039826246.1 mRNA upstream 165505 13867284 ~ 13884326 (+) True LOC120575449
XM_039826247.1 mRNA upstream 183275 13863511 ~ 13866556 (+) True LOC120575450
XM_039826245.1 mRNA upstream 202923 13840149 ~ 13846908 (+) True LOC120575448
XM_039824743.1 mRNA downstream 9820 14066786 ~ 14096876 (+) True LOC120574464
XM_039824744.1 mRNA downstream 10264 14067230 ~ 14096876 (+) False LOC120574464
XM_039826120.1 mRNA downstream 371151 14428117 ~ 14429657 (+) True LOC120575371
XM_039825544.1 mRNA downstream 488688 14545654 ~ 14549374 (+) True syngr2a
XM_039825137.1 mRNA downstream 496203 14553169 ~ 14558801 (+) True cant1a
TU209715 other upstream 195545 13847139 ~ 13854286 (+) True G154743
TU209660 other upstream 268146 13774701 ~ 13781685 (+) True LOC120573994
XR_005641808.1 other upstream 274101 13769019 ~ 13775730 (+) False LOC120573994
TU210109 other downstream 924270 14981236 ~ 14983283 (+) False si:dkey-282h22.5
unassigned_transcript_850 other downstream 928734 14985700 ~ 14986913 (+) True LOC120574428
unassigned_transcript_851 other downstream 935047 14992013 ~ 14992508 (+) True LOC120575440
TU210192 other downstream 1078825 15135791 ~ 15139706 (+) True G155088
TU210329 other downstream 1453259 15510225 ~ 15512810 (+) True arl16

Expression Profile