RNA id: TCONS_00069897



Basic Information


Item Value
RNA id TCONS_00069897
length 882
lncRNA type read_through
GC content 0.46
exon number 6
gene id XLOC_035646
representative False

Chromosome Information


Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23194212 ~ 23212965 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGCTCGTCGCTGGTTAAACCCAAAGCCTCTTGTGTACGTTGAAGCCAGGAAGGGTCGAGTGTTTTCCCCCCCGTTTAACGCTACATATAGGCGGTGACATTTGTTTAAAGACTCGTGAACGTGATCGAAGATCGTCTTTAGTCAGAAATGGACTCTTCTGAACAGGGCTCTTCAATGAATGCAGGTATAGCAGCTGGAATGACTCTACCGCCAGGCGTGACCGAGGAGGAGGCAGAAGAGATGCAGATGGAGCTCATCAAGgTGGAAGATGAGATTGAGACACTGAGACAGGTTCTGGTGGCGAAAGAGAGACACGCGGCTGAGCTCAAACACAGGCTGGGCATCAGTCCTCTCTCTGAAATCAAACAGAACATCACCAAAGGCTGGCATGACGTTCAGTGCTCCAATGCATACCTTACAGCTTCAGCCACACTGGAGGACATTGGACGCTCTGATGCCTATAAGAGGACTCAGGAGACTCTCTCTCAGGCCGGTCAGGTGACATCAGCTGCGTTCTCCTCTATGGGCTCCGCCATCAGAAGCAGATTCGGAGAGATGAGGGCTCTGCCATACTCTGATTCTGGGTAAGAGCTTTTTACGAGAGCCTGTGCCGAAGACACACATCTTGTTTTTCAAGAATATTTTATGCTACCCATGAAACTCTAGATGTATCCAACTTCTGTTTTATGGAAGTCTCCTTTCATACGATTATACAGTGCCTATAAAAAGTCATCATACCCCTTTGAAATAATGATCTTATTTGTCATATACCCTGAAATCAAATTGCATTCCAAATAACTTTTCCAGCCTTTGAAAGGTTTTTGTATCCTTCTCCCAACCTGTGCCTTTCTACATTTATCCTGAATGTCTTTTGAAAGCAGG

Function


GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00071928 lncRNA upstream 63348 23128346 ~ 23130897 (+) True XLOC_035642
TCONS_00069884 lncRNA upstream 64514 23128233 ~ 23129731 (+) False XLOC_035642
TCONS_00069883 lncRNA upstream 85241 23106919 ~ 23109004 (+) True XLOC_035640
TCONS_00069862 lncRNA upstream 704683 22488355 ~ 22489562 (+) False XLOC_035630
TCONS_00069863 lncRNA upstream 704885 22488774 ~ 22489360 (+) True XLOC_035630
TCONS_00069906 lncRNA downstream 6650 23213343 ~ 23215712 (+) True XLOC_035647
TCONS_00072196 lncRNA downstream 33574 23240267 ~ 23252608 (+) True XLOC_035648
TCONS_00072197 lncRNA downstream 35686 23242379 ~ 23245351 (+) True XLOC_035649
TCONS_00071929 lncRNA downstream 53718 23260411 ~ 23265673 (+) False XLOC_035651
TCONS_00069908 lncRNA downstream 53718 23260411 ~ 23265673 (+) True XLOC_035651
TCONS_00069893 mRNA upstream 14396 23165749 ~ 23179849 (+) False XLOC_035645
TCONS_00069894 mRNA upstream 14655 23174137 ~ 23179590 (+) True XLOC_035645
TCONS_00069892 mRNA upstream 28832 23152330 ~ 23165413 (+) True XLOC_035644
TCONS_00069891 mRNA upstream 30042 23152244 ~ 23164203 (+) False XLOC_035644
TCONS_00069890 mRNA upstream 39290 23147609 ~ 23154955 (+) False XLOC_035644
TCONS_00069904 mRNA downstream 6627 23213320 ~ 23216035 (+) False XLOC_035647
TCONS_00069905 mRNA downstream 6637 23213330 ~ 23215831 (+) False XLOC_035647
TCONS_00069907 mRNA downstream 38903 23245596 ~ 23250196 (+) True XLOC_035650
TCONS_00069911 mRNA downstream 148791 23355484 ~ 23381548 (+) False XLOC_035653
TCONS_00069910 mRNA downstream 148791 23355484 ~ 23381548 (+) False XLOC_035653
TCONS_00069887 other upstream 44309 23147230 ~ 23149936 (+) False XLOC_035644
TCONS_00069870 other upstream 404596 22789531 ~ 22789649 (+) True XLOC_035634
TCONS_00069866 other upstream 697943 22495431 ~ 22496302 (+) True XLOC_035631
TCONS_00069857 other upstream 717946 22474195 ~ 22476299 (+) True XLOC_035628
TCONS_00069849 other upstream 824449 22366920 ~ 22369796 (+) True XLOC_035625
TCONS_00069909 other downstream 136190 23342883 ~ 23342998 (+) True XLOC_035652
TCONS_00069918 other downstream 176039 23382732 ~ 23388145 (+) True XLOC_035654
TCONS_00069942 other downstream 531430 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069944 other downstream 531463 23738156 ~ 23742976 (+) True XLOC_035664
TCONS_00069946 other downstream 574312 23781005 ~ 23781394 (+) True XLOC_035666

Expression Profile


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