RNA id: TCONS_00069908


Basic Information

Item Value
RNA id TCONS_00069908
length 3308
lncRNA type antisense
GC content 0.42
exon number 2
gene id XLOC_035651
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23260411 ~ 23265673 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAGAGCGACCCGGGGTCATGTCCTCCCCGCACGTGCTCAGTTCCGTCTTCACAGAGTCATAGCTTCCTGAGCTGTACTGGGGGGACTGGAGAACACATGCGGCATGTTAGGCAAAACCAAATCTGATGCCATGCAAAAGGAGTTaagtgttcagatgcaaaagtgCCGTATTTAGTTTAAGTTGTTACATTTTTATGGCGATGTAAAAGGTTTTTTCATagcctttaaagtgaaaaaactgaatataATAACCAGAGCAGCCATAGCCAGAATGTTTCAGAAGGCACTTAGAGGCCTTTGCATCTGAGCTCTTCAATTATTAGTTGACATATTAACATGTTCATAATCTCATACCTTGTTTCCATACTCGGTTTTGACTGGGAATTTTCGGCTCGGGTCAGATGCGTAGGATCCGAGCGTCACGCCGGGCAACAGTCTGTCGCTCAGGTTGACGGGCTGCTGTCCCTCCTGTGAGGAAGAAGAGGATGAAGTGCTGAAGTCCAGCGGCGCTGCTGCACCATTACCGTTCACCTCTCCGTAAGGGACCACCCCCTCCGATGCAGGAACTCCTCCGGTCGCCATGGCAGCACCACCAGGCGGAGTCAACGCAGGCAGACCATTCGCAGTGCTGCCATTCTCCGAAGAGGAATCatctgagagagagagggagagacacaAGGAAAGCAAACTTGGGACTAGTTGACCGCGATGACCGGGTTTGAGTTCAGCGAAGAACAATTTcggaaaccaggtaaaacaaaagttaataaataaataaataaccaacagGCTGAAAACACGCGGTCAcgatggcttttttttttctagatcgacagcaagctggcctggtcggctgaagtgtatattgcgccctctggtggatttatgcgagaagaggaggaatttgtgatcatcaaaaagcatacacagcagcctctggtggatttgcaataACAAAAATCTGCGATCAGACGTACCTCCGGTTATGTTTTTAGCTGTCCcctgaaatgtatacaggggtatatATCCACAATAAGCCTGGATTGAAAATATGCATTGTGTGGGCAATGAGATCTTAACAAACAATATATAGTGTGTTAAAACAGCAAAAGAACCGATGCACTCTGATGGTGGGGTGCGTTTTTAATCATCATCCTCTTGCCCTGTGTGTCTCTTAACAGAAAACAAGTCTGCCTTGAGTCAAAGGAGGGATCCATTAGTGCATGGTTACATTTATACAGAGCACAGGATGGGAAAAGCCTCATTACTTCATAAAACACAAGGAGTGGATCACAAGCGCATCCCATAACAACCACACCAGACAGCGCAGATATCGAAAATTACAAAGCAGATTTGAGTAAACAAGAGCAGCGCCGGTAGCTACGCAGAAACTGTTTCTGTGGGAGAACACACACTTGATAACGGCGGGAAATGAAAGACATATCAAATTAATAAACCAGTCCCAGACAGTCACAATTTGTTTGCTCCACCTAAACAGCATTTTCAAGGGTTGAAAGCTCACTGAATAGGGATAATACCCTCACCAGTCAATTTAGTAAGTACACTTTGCTAGTACCGGGTTGCTTCTGAACTGCCTTGATTCTTCTTGATAGATGTTGAAAATTTTTTGCAGCAGACTTGTCGGCTGCACTTATATGATGCAAATCCCTAGCTCCAACATCCCCAGGTTGCTCTactgaattgagatctggtgtcTTTAAAGGTCATTTGAGgctagtgaactcattgtcatgaaaGCAGTTTGAGATGACTTGAGAATTGTGACTCGTCACTTTTCTGGCAGTACAAAGGATTAGTAATAATACTCTGTTGGTAAGCTGTTACAAGCTCAGTTGGTACTAAGGGGcataaagtgtgccaagaaaatgtacACACAGatatcacctatatactatacaAAATGTAGGTTGACCATGTttatatataacaatttaaattgttaaaaggTATTAGTTAGTAGttatttaaagttattagtaCCTAATAGATTGTTTTCAATCATGTGGTTCTGGTGATGCGCGGAATTCAGATGGAGAGCaggagataaaaaaaaactgaatggggAACATAGaggaaagtctgtatttttgcaatttatactatattttaaaggagatataaatagaaaacaacCACATACAGTATGTTGGGAATAATCCTTATGTCATGAAGAAGACCAAGTTTTCTATGAAGCTACAATATATTTGCCATCGAGACAATAGATAGCCCTTATAGTAAGTACTATATTGTTTTGGAACATACTGTGGTAATAAATTATCCATTAGGCATTTTAGTAATTAAACACCATCACAAagcaccacagtttacactaacgttacagtatttattagagTTTATTAGTGTACCAGTATTCtgtagcatttattaacaaagagCTGTACTATAGAATATACACTTtactatccacttgttaagtggtgaAGTGTTTgggacgtatgtatactgtttccgggtccaagccgccattcatttgagtggagaaatcattcgtttatgatcacgttttattcccatcacacattaaagttaattttatataaaatcgtagtgtatacacaacaatctctgggcttgctgcataacaaataccaaaaatttaacaatttataaaaaatgtatcactttttcGCCATCGGATATttggcatggacatatatactgcgatcgtgattttcgaaagcattaaatcgttttgtaaacgtttattattaccatttcatgagtctccccattcagttgaatggagcgcttggacccggaagccgattCACGTGACGTCACATTTAACAAGCAGATAGTGTGTGTTACgagaaccagcgatcgctctccggagatcgctggtttccactatacttggactacacttccgccttctccTGGACTACATttgcatacatgcacttcgcccagacacccatgctcacctATCTCGCTTGATTACACTCACCACCTGAACCTTGTCATAGACTGATAGCATTCCATACATAAGCCACTCATGATCCagtccagtttgccgagtcttgtttgctacatagtgacattacaacgcctTTCCCGTCTTGTTTTCTCCTtgttagaccttagccttgtatttcctgttctcctgtttagccgcctgccttttgacctgttgcctgttaATAAGACTACGATTTTGGATTTGCCTGCACATACCTGTTAGTACCTGATTTGTCCACTGCTTGCCTGTCGCTGAATAAACCTGcttattggatcttacctcctgttgtatCTGTCACTCTACCC

Function

GO:

id name namespace
GO:0090085 regulation of protein deubiquitination biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000154032

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072196 lncRNA upstream 7803 23240267 ~ 23252608 (+) True XLOC_035648
TCONS_00072197 lncRNA upstream 15060 23242379 ~ 23245351 (+) True XLOC_035649
TCONS_00069906 lncRNA upstream 44699 23213343 ~ 23215712 (+) True XLOC_035647
TCONS_00069897 lncRNA upstream 53718 23194245 ~ 23206693 (+) False XLOC_035646
TCONS_00072198 lncRNA downstream 197145 23462818 ~ 23472866 (+) True XLOC_035657
TCONS_00069930 lncRNA downstream 387474 23653147 ~ 23655827 (+) True XLOC_035660
TCONS_00069943 lncRNA downstream 472450 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069954 lncRNA downstream 570456 23836129 ~ 23848523 (+) True XLOC_035669
TCONS_00071930 lncRNA downstream 633050 23898723 ~ 23907373 (+) True XLOC_035671
TCONS_00069907 mRNA upstream 10215 23245596 ~ 23250196 (+) True XLOC_035650
TCONS_00069904 mRNA upstream 44376 23213320 ~ 23216035 (+) False XLOC_035647
TCONS_00069905 mRNA upstream 44580 23213330 ~ 23215831 (+) False XLOC_035647
TCONS_00069903 mRNA upstream 47446 23194392 ~ 23212965 (+) True XLOC_035646
TCONS_00069902 mRNA upstream 49839 23194266 ~ 23210572 (+) False XLOC_035646
TCONS_00069911 mRNA downstream 89811 23355484 ~ 23381548 (+) False XLOC_035653
TCONS_00069910 mRNA downstream 89811 23355484 ~ 23381548 (+) False XLOC_035653
TCONS_00069912 mRNA downstream 90591 23356264 ~ 23381199 (+) True XLOC_035653
TCONS_00069913 mRNA downstream 116219 23381892 ~ 23390368 (+) False XLOC_035654
TCONS_00069914 mRNA downstream 116276 23381949 ~ 23388645 (+) False XLOC_035654
TCONS_00069887 other upstream 110475 23147230 ~ 23149936 (+) False XLOC_035644
TCONS_00069870 other upstream 470762 22789531 ~ 22789649 (+) True XLOC_035634
TCONS_00069866 other upstream 764109 22495431 ~ 22496302 (+) True XLOC_035631
TCONS_00069857 other upstream 784112 22474195 ~ 22476299 (+) True XLOC_035628
TCONS_00069849 other upstream 890615 22366920 ~ 22369796 (+) True XLOC_035625
TCONS_00069909 other downstream 77210 23342883 ~ 23342998 (+) True XLOC_035652
TCONS_00069918 other downstream 117059 23382732 ~ 23388145 (+) True XLOC_035654
TCONS_00069942 other downstream 472450 23738123 ~ 23740810 (+) False XLOC_035664
TCONS_00069944 other downstream 472483 23738156 ~ 23742976 (+) True XLOC_035664
TCONS_00069946 other downstream 515332 23781005 ~ 23781394 (+) True XLOC_035666

Expression Profile

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