RNA id: XM_039823756.1


Basic Information

Item Value
RNA id XM_039823756.1
length 2212
RNA type mRNA
GC content 0.50
exon number 19
gene id nup85
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11319249 ~ 11328213 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTGACGTCATCACACCTGCGCCAGGGCTTTCGAATCGACTGAGGCGCGTAAGCAGCACTGCACCTGTAGTTCATGGCGTGGAGTGTTTATAACTGAATAGTTCAGTAGTCATTTATACGTTATTGCTTCGATAATATTGTTCCCTGATGGAGGAGTTAGACGTTGAGCCGGCAATCACCAATATTCCTGCAGCCAGTGATGGGAAGCATTTGGGATTTGCATGGGGTCCAGGTGATATCCTTGCCTATGAGACCCTTTACATGGCATCAAGTGCTAAAGGATCAAGCTGCTCCTTCATCCATGAGGTCAGAAAAGATGAGGACATATATTCCCCCATTTTACGCAAACTCTTCAATGAGTCACATCACATCTTTGTTGGCCTGCAGACAATTAGAGAGGACCTCCCCAGCAAGAACAAGAAAACCCAATTTGTCAGCATTAGTAAAAACTATAGATCTGTGATAAGAGCCTGTATGGAGGAGCTTCAGCAAGTTGCAGTTTCTACAAAAGTTGCAGAAGTGGCCACGCAATATGGAAATCAGGTGTCCATTCTGTTGGCTATAGAACTTATCTGGAATCTGTGTGAAGTGCTGTTCATCGATGCTGCTCCTGCGGGTCCCCTGTTGCTCCACCTCCTAGACTGGGTCAGGTTACACAAGGGTGATGTGGATGAGAAGGCCAGAGAAGTGCTGCAGAGCGAGAGTCCTGCCGAGCACCACGACTACTGGGATGTGGTGGTGAGTTATGTGCTGCAGGGCAGGTTTGAAGAAGCCAGACAGATGCTGGTGAAGCAGGCCACCCTACAGCCTGCTGCCAGGAACATGTATAAGCTGATGGACACTCTTCTCAGCAAGATGCCCTTCTACAATCCTGGTGGCACCCAGACGCTGACAGAGTTTGATGTGAAGTGGAGACACTGGCATGAGGAGGTGGACCGCTGCCTGCAGGACAACTCATTTGCCAGCAACCAACATCTGGAGATCATCTGCAAGATCCTAGTTGGGGATGAAGACACTTTGCTGGAGCACAAGGAGCTACTGAGCACCTGGTACCACTTCCTGGTCACTAGACTGCTCTTCTGCCACCCCACCGTTAAACCCACTGAGTTACACTACTATGCACAGtCTTGCATGACGATGTTTCTGGACTTAAGGAGTGTCCCAGAGCCCCTGGACAGCATCTTACTGGCTGCCTTTGAGTTTGACATCCATCAGGTCATCAAGGACTGCAGCATTGCTCTCAACAACTGGTGGTTTGTGGCCCATTTGACAGATCTGTTGGATCATTGCAAACTCCTCCAGTCTCACAATCTACActttgGCTCCAACTTGAGAGAGTTTCTGCTGTTAGAATATGCTTCTGGTCTCTTCACTCATCACAGtctGTGGCAGTTGGCCGTGGACTACTTTGACAACTGCCCAGAGTTTGGCCATGTCTATCTGGAGCTGCAGATTGAGCGTGTACCTTTAGACACGGAGCGCAAAGCCCTCAAGGTGCTCAGGATCTGTGAGCAGAGGCAAATGTCGGAGCAAGTGCGGAGTATCTGTAAGATCATGGCTATGCGGGCCCTGAGGAACAACAGACTGGGCTCCGCTCTCTCCTGGAGCATCAGGGCCAAAGATGCTGCCTTTGCCACCCTCATTTCAGAGAGGTTTCTACAGGATTACTGTGCCAGAGggaccttctctgatttggacCTGATAGACAACTTGGGTCCAGCAATGCTGCTCAGCGACAGGCTCACTTTCCTTGTGAAGTACCGTGAGTTCCACAAGCTGTACGAAGAGAAACACTTCAGTGAGGCGGCCAAGCTGCTCCTCTCCCTCATTACGGCCAAGATCGCTCCCCGAAGCTTCTGGATGACTCTGCTGACCGACGCCCTGCCGCTGCTGGAGCAGAAAGAGGTGATCTTCTCAGCAGACCAAACCCATGAGCTGATGTTCTGTTTAGAGGAGCTCACTTCCTCACTGAACACCACAGCTCCCGGCACAGACGGGACCATGCAGGATGAAGACATAGAGCAGACCAAAGTGGAGCTCCTGAGACTTGCTCTGGCCAGGAATCTGGCTATGGCTATAGTCAAAGAGGGAACTGTGGAAGCATGAATGGTGACATTAAGAAGAAAAGCTCTTCTTTTGcatttttgtattgtatataaAGTTCAAGTAATCAAAATGTGCTCTTTGATAATAAAACACTTTTCACGATGTA

Function

GO: NA

KEGG:

id description
K14304 NUP85; nuclear pore complex protein Nup85

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208736 lncRNA upstream 756 11310425 ~ 11318493 (+) True G154038
TU208690 lncRNA upstream 105908 11207041 ~ 11213341 (+) False LOC120574068
TU208556 lncRNA upstream 236542 11081649 ~ 11082707 (+) True G153917
TU208555 lncRNA upstream 238591 11079752 ~ 11080658 (+) True G153916
TU208554 lncRNA upstream 239569 11078455 ~ 11079680 (+) True G153915
TU208753 lncRNA downstream 23997 11352210 ~ 11352460 (+) True G154051
TU208814 lncRNA downstream 161693 11489906 ~ 11493649 (+) True G154109
TU208833 lncRNA downstream 170636 11498849 ~ 11501165 (+) True G154124
TU208864 lncRNA downstream 315943 11644156 ~ 11649921 (+) True G154149
XR_005641915.1 lncRNA downstream 363695 11691908 ~ 11695459 (+) True LOC120574841
XM_039824112.1 mRNA upstream 94000 11212710 ~ 11225249 (+) True LOC120574068
XM_039824109.1 mRNA upstream 109411 11202778 ~ 11209838 (+) True LOC120574067
XM_039824110.1 mRNA upstream 109411 11202778 ~ 11209838 (+) False LOC120574067
XM_039824111.1 mRNA upstream 109411 11203116 ~ 11209838 (+) False LOC120574067
XM_039824828.1 mRNA upstream 227103 11088206 ~ 11092146 (+) True LOC120574489
XM_039823757.1 mRNA downstream 9838 11338051 ~ 11341483 (+) True mrps7
XM_039826301.1 mRNA downstream 20003 11348216 ~ 11351460 (+) False slc25a19
XM_039826303.1 mRNA downstream 20005 11348218 ~ 11351460 (+) False slc25a19
XM_039826302.1 mRNA downstream 20023 11348236 ~ 11351460 (+) False slc25a19
XM_039826300.1 mRNA downstream 20026 11348239 ~ 11351460 (+) True slc25a19
XR_005641865.1 other upstream 245423 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 566351 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 977626 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 1252507 10065460 ~ 10066742 (+) True G153433
unassigned_transcript_846 other upstream 1344676 9973204 ~ 9974573 (+) True LOC120574581
TU209004 other downstream 757648 12085861 ~ 12115192 (+) True G154254
TU209291 other downstream 1515210 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 1688773 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 2440806 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 2440806 13769019 ~ 13775730 (+) False LOC120573994

Expression Profile