RNA id: XM_039824828.1


Basic Information

Item Value
RNA id XM_039824828.1
length 1189
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC120574489
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11088206 ~ 11092146 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAGTCTCACATGAGACTGAAGGAAACAGGAGGAGTACAACATGACTTAGCTTTGGTATTTCTTAGTGTGTTTATAACTGAAAAGGCCATGAAGACGAGCTTGGCATGTATTCTAatattcattcagctttttgaAGcCTCCACAGAGTTGATCTTTAGGCAGCTGACGGAGAGCCAGTCACTGGAGCTCTCCTGTTCCCCTCGGCTGGAGCGTAGCAGCCTGACGGCCCTCCACCTGTACCACCGCAGTGCCCAGAGCCAGATCACCCTGCTGTCCATGGCCGAGGGCGGCGAGCTGAGGGTCGACCTGGAATACCGAGGGCGGCTGCAGATCTGTGGAGGTCTGGACTCCCTGCAGGTCAATGTGACCATGTCCCATTTACAGCGCAGTGACACGGGACTCTACATGTGGGAGCTGAGATACAGAGAGAACAGCTCTAATCAGATCATCTTCAGTGCTCAAAAGGTGTTCTTGTTGGTTGAAGGGACAGGGAGGTCATGCCAGTGCTCTCCCAGTTACCCTCCTCTGCTCTTGACCATCTTTACAGTAACAGGGCTTCTTCTACTCACACTCAGCTGGCTGGCCACAGAGAAATGTGTGAAGGCGAGGAATCATCACAGACCACAACCTCCGGTTCCTATATATGAGGAAATGACCAGGAAGCAGCAGAGTGCCGGAATCCACCAAAATAACCCAGAGGCCCCATCACACCTGGAGGAAGTCAACTTCCCTGTGTACGCTAACTCCAACATCCGACAACCACAGGAAAACTATTACGCCTGTCCCAGACAGCTCGCCCTCAGAGCCTGACGTGACTTCTGGCAACATTCACAGGAAGACACCAGCTTTACTGCAGCAATATGAGACCGAGAGCCGACTTCTCATCCAGGAATTAAAAAAGATTGGTGGAAAAAAagccacagagacaaacacCAAATGGCACATTTTTAACAGCCAAGAAAAAAACCgctattttattaatattgaaaGAAGCTCCATAGTTCATGAAAACATTTGTTTCGGTGCATGTCATGTAACAATCACATTCTATGAGGAGAAAGatatacagagaaaaaaaaaaaaaaacattacaagcCACTGACTTTTCATAAATCTCAgtacatacatttttacttaatatttccaaaacaaaaaggcaaaaaaaaaaaaaaaagagaaaagaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208556 lncRNA upstream 5499 11081649 ~ 11082707 (+) True G153917
TU208555 lncRNA upstream 7548 11079752 ~ 11080658 (+) True G153916
TU208554 lncRNA upstream 8526 11078455 ~ 11079680 (+) True G153915
TU208494 lncRNA upstream 79156 10973335 ~ 11009050 (+) True G153872
TU208521 lncRNA upstream 118362 10967630 ~ 10969844 (+) True G153892
TU208690 lncRNA downstream 114895 11207041 ~ 11213341 (+) False LOC120574068
TU208736 lncRNA downstream 218279 11310425 ~ 11318493 (+) True G154038
TU208753 lncRNA downstream 260064 11352210 ~ 11352460 (+) True G154051
TU208814 lncRNA downstream 397760 11489906 ~ 11493649 (+) True G154109
TU208833 lncRNA downstream 406703 11498849 ~ 11501165 (+) True G154124
XM_039824805.1 mRNA upstream 14380 11063859 ~ 11073826 (+) False LOC120574482
XM_039824810.1 mRNA upstream 14380 11063870 ~ 11073826 (+) True LOC120574482
XM_039824804.1 mRNA upstream 14380 11063870 ~ 11073826 (+) False LOC120574482
XM_039824809.1 mRNA upstream 14380 11063870 ~ 11073826 (+) False LOC120574482
XM_039824808.1 mRNA upstream 14380 11063870 ~ 11073826 (+) False LOC120574482
XM_039824109.1 mRNA downstream 110632 11202778 ~ 11209838 (+) True LOC120574067
XM_039824110.1 mRNA downstream 110632 11202778 ~ 11209838 (+) False LOC120574067
XM_039824111.1 mRNA downstream 110970 11203116 ~ 11209838 (+) False LOC120574067
XM_039824112.1 mRNA downstream 120564 11212710 ~ 11225249 (+) True LOC120574068
XM_039823756.1 mRNA downstream 227103 11319249 ~ 11328213 (+) True nup85
XR_005641865.1 other upstream 14380 11064422 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 335308 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 746583 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 1021464 10065460 ~ 10066742 (+) True G153433
unassigned_transcript_846 other upstream 1113633 9973204 ~ 9974573 (+) True LOC120574581
TU209004 other downstream 993715 12085861 ~ 12115192 (+) True G154254
TU209291 other downstream 1751277 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 1924840 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 2676873 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 2676873 13769019 ~ 13775730 (+) False LOC120573994

Expression Profile