RNA id: XM_039824810.1


Basic Information

Item Value
RNA id XM_039824810.1
length 4235
RNA type mRNA
GC content 0.44
exon number 12
gene id LOC120574482
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11063859 ~ 11073826 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTACCGGTATCTCTGTTACTGGGCACGTTTCGTTCCTGAAGGTCTAGCGTTTAGTGTTGTTTATTACGAAGCGTTTGTCTTTAAATTGGCTGTGTAAATATTAGTTTTGGACCACCCGATGGCGCCTTGAGGCCGCAGTGTGTTGTGGGGACTtgagaccagaccagaccattgacatataggACCAGACCCGACGCCATCTTCAATATCCCCAGTTGTTCTCTTCTGGTCGGTGTGTTAGCTGGTTTACTTCACTGAATTAACGTTAGTATTACAGAAATCAtgggaagaaagaagaaaaagcaaaTGAAGCCTTGGTGCTGGTACTGCAACAGAGATTTTGATGATGAAAAGATTCTCATTCAGCATCAGAAGGCCAAACATTTCAAGTGCCACATCTGTCATAAAAAGCTGTACACTGGCCCTGGGCTTGCAATCCACTGTATGCAGGTTCATAAAGAGACCATTGATGGAGTCCCCAATGCAATACCTGGAAGAACTGATATTGAGCTGGAAATCTATGGCATGGAGGGTATTCCCGAAAAAGACAtggaagagagaagaagagtgCTAGAACAAAAGAACCAAGAGACtcaaaagaaaaagcagaacCAGGATGACTCTGATGAGTATGATGAAGATGACGAGCCTGGTCCCTCCTTCCAGCAGCCTGCTGCAGGCCAGCCACAGGCAGGCTGCATACCCCCTATGACCCAGCCTGGCATGCCTCCTGGCTCTGCTGCTTCAGGGATACCACCAGGCAGCTACTCAgGAATTCCCCCAATGATGCCAGGTGTGCCACCAATGATGCCAGGAATGCCCCCCGTAATGCCAGGAATGCCTCCAGGGATGATACCAATGGGTGGGATGATGCCTCCAGGTCCAGGGATGCCACCAATGATGCCAGGTGTGCCACCAGGCATGCCTCCTCCTGTGGGCCACCGTCCAGGCATCACACACATGGCTCAGGCAAATATGCTGACTAGACCTGCTGTCCCTGCTGCCACTGTCCCCTCAGGCCAGCCTGATGTAACAAAGCCTCTTTTTCCCATTGCTGGACAGATGGGCAGTCGTGTTGCAAGTACAAGTGCAGGCTCATCCAGTGCAGACTCTCAGTCTGCCTCCCCTAAAGCTCTGTTCCCTGTCACGTCACAAAGTCTGCAGTCAGGGTCCCCCCACCCtccttcctctacctcctctgATCCCTCAAAGCCCACATTCCCGGCCTATACTCAGGCCACCGTAGCTGTGGCCAGCACCAATGCTGGCAGCAGTACGGTCTCCAAACCTCCCTCTACTGTGACCAGTAAGCCTGCCACCCTCACCACCTCCAGTGCAACCAGTAAGTTGATCCACCCTGATGAGGATATCTCACTGGAAGAGTTGCGCGCTCAGTTGCAGAGGTACCAGCTCAGTATTCTCCGCCCAGGCCAGAACAGTGCTGCTGCCCCGTCAGCGGGTTCCGTGGGTGGGATGATGGCTCCTCAGCAGTCCAGCATGAGGCATTCCATACCTGGCCAGTACGGTGGTCCACCCCAGGGGCTGCCAGGCTACATGCCAGGAGGGATGCTTCCGTACGGACAGGCCCCTCCTGTGGTTCCCCCAGGGTACCAGGGAGCCCCTCCACGGCCACCCATGGGTATGAGACCCTCTGTCATGTCTCCTGGAGCCCGCTACTGAAGCCTGCCATCTTCTCTTCAATAGGTTTGGACACTCAACCCTTTTCTAATGTCCTCAGCTGCTAGTAGACAAACCAGTATTGGTATTTTAGTACCACAACATACTGTTTATTCTACTACTGAGCAATGAGGAAGAGACACTGAATAAACAGCAAACAAAAGAATCACAGAGCGCATGGGAAGTATTTACACTGTACCTAACCAAGACTATGTACTGTTGTTTCAAACCCTCTCTGTtctgtggcttttttttccttctcatgTTTCATTCAGGTTTATAGAAGTGTAGTAGATATGGTTCGTAGTGTTGTGAAGGCGCTGGAGTTACATGAGCAGTACCCAACCTTTATCAAGGCAAGTTTTatgtaaatacatttctgtTCTAAGCTTAACAGTGAGGCCTTCACAGCACGTAGTGCTGTTGGACTTTGTGTCCCCAACTGTGTTTGGTGAGGGCTTCAAATAACTGTTGATGCATTCATTCTGTTTTATGTGCATAGTTTTAATGAAGAGGTACTCCCATAACCTTAAATAGTTGAAGTACTAAATGAAGTGATATATGTATTGTTGTAAAACTGTATTGTAATAAAATGTGGCAAAAATGTAAGACTCTTCTTTGCGGGATGTTAGTGGGAAAAGAGACGTCACTGCAGGTTTGTACTCCAGTTGAAATATGTtggtaaatgttttcttttggcTAGAAACAGTAtattgatttttaatttttattgatTCTCTGAACGTGGCAAGTGCATTGTACAGCTGCATAATTCCGGGTCGCTGTAGCGCTAAAACCCAGATTTCTCTTCTCCCTGTAGCGATGCCATGGGGGACTGGCTGAGGCCCTGTCTCAGTGTAGCCCTGTTTCAGCCTGAGGCAAGTCTCACCATTTTCTGTCTTCTCATTCATTACCAGGGGCCCTCACAGCTTACACGCTGTTGGATCTCAATGTCCCCAAACTTGCAGCAAGTTTGGTGAAGGcccttgtttgtgttgttgcgTTTAGGCACCATTTTCTTCAGGCATGTAAATTATGTTCTTGATTGTTAACCTCTAATGTGTCATTGAACCTGTATCCTCCATTCTTGGTTGGTGAGAGCATCAGGAAGCTCAGTTTTCATTTAATAACTTTATACTGAAAGTATGGAGCTTTTAAATGAAACCGTATTCCTTAAGAAGCTTTTTATAATAACTAGTCCTACagtcaacagcaatttactgccTAAAATATTAAAGCTTGGTCAAAAGTCTGTCACAAACAGccataaatacattaaatgttTGTTGGGAGGTTTGTGATGAACAAATGACTTTTCAtatgaatgtgaaaatgtctTTACTACTTAATCCTGTTTGTTTCATCAGCTGTCCTCACTTGATCATTTGAGTTTAACTACTTACATGAAGGAGAATCCCTACCAGTAACAGGTTAGTTAAAGCTGTAAGTACCACTGCTGTAATTTTAACTTCCGTCaacctgtgttttgtgtgctcACACAGTtagtcacctttttttttttttttttaacaaaatgagCCCATAATAATTAAGCATTCTACATTTATAGCAGCCAATCATTCAATATGATCGAGGAATAAGTCGGGGCAGAAAACATATGTGTGCAACACATTTCTTTCCACTAGTTCCTCTTAATGTGATCAGCATCTATAGTTTTTGATGGGAATGACCTCCATTTAAACTAATGATTTAATGCTTTACTTGAGTATCAAAAGGAGAGTCTTCACTGGTAAGTATGGGCTCATCACTTCTGTTTAATGTGCTAACAGGGCCGTGTCTGGGGGGAGTGGCACAGGTCACCCAGTGCGCCAGGTTAGAGGCGGTACCTTAGTTTGTATTTTGCTGGAAATTGGAAGTTGTTTATACAGTATTGTCCATGCAGGcttattcattttaatgttggtactttatactttgactttatttttgaatgtgcattgttttctgttgtatgtagcctacatttagagGTACAATTTATTTTTGAGACTTAAAGAATAAAGTCTGGAAGCTTTATATTACATGTGTATGATGTAATATACCAATCATGTGTATGATTGGTAGGTCTATttatcttttaaataaacattttaaaaacagagGAATGTCAGAACCTGTGAGACACTGTAATGTTAGTAATTAAAGTAGATAAGCGTATTGGAAAACAGAATGTTCAGGCTATTCTgacatgcatttgtgtgttcaCCTGCACACACTACAAGCCACCTGTATAAGTGAGTGTCCCACTTGGATCACCCCAGTCAAAGTCTGGAATGTATTCTAATTCTCAGTTAATATTGAACAATTGTATCTGCTAAATAAtacagttaaataaaaatatacattttcattAGCTTGTAGTTATTAAAGCTTTGGAAGAGGTTTTTCCGGTTTTAATTTGAGTGAAACATTCATCATGAATATTTCTTTTAGGATCAGTCCCTCAAAGCACAACTGGATTTGATTTGTGATGAATGCGCCACTGTCTGAAtgtatactgtttttttatttttaaataaaccagTTCCTAAACTCTT

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208494 lncRNA upstream 54820 10973335 ~ 11009050 (+) True G153872
TU208521 lncRNA upstream 94026 10967630 ~ 10969844 (+) True G153892
TU208497 lncRNA upstream 131341 10931719 ~ 10932529 (+) True G153875
TU208383 lncRNA upstream 245698 10786862 ~ 10818172 (+) False G153817
TU208554 lncRNA downstream 4629 11078455 ~ 11079680 (+) True G153915
TU208555 lncRNA downstream 5926 11079752 ~ 11080658 (+) True G153916
TU208556 lncRNA downstream 7823 11081649 ~ 11082707 (+) True G153917
TU208690 lncRNA downstream 133215 11207041 ~ 11213341 (+) False LOC120574068
TU208736 lncRNA downstream 236599 11310425 ~ 11318493 (+) True G154038
XM_039824813.1 mRNA upstream 5647 11055103 ~ 11058223 (+) True LOC120574484
XM_039824814.1 mRNA upstream 5647 11055103 ~ 11058223 (+) False LOC120574484
XM_039824815.1 mRNA upstream 5647 11055103 ~ 11058223 (+) False LOC120574484
XM_039824802.1 mRNA upstream 8804 11037682 ~ 11055066 (+) False rhot1a
XM_039824801.1 mRNA upstream 12647 11037681 ~ 11051223 (+) False rhot1a
XM_039824828.1 mRNA downstream 14380 11088206 ~ 11092146 (+) True LOC120574489
XM_039824109.1 mRNA downstream 128952 11202778 ~ 11209838 (+) True LOC120574067
XM_039824110.1 mRNA downstream 128952 11202778 ~ 11209838 (+) False LOC120574067
XM_039824111.1 mRNA downstream 129290 11203116 ~ 11209838 (+) False LOC120574067
XM_039824112.1 mRNA downstream 138884 11212710 ~ 11225249 (+) True LOC120574068
TU208368 other upstream 310972 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 722247 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 997128 10065460 ~ 10066742 (+) True G153433
unassigned_transcript_846 other upstream 1089297 9973204 ~ 9974573 (+) True LOC120574581
unassigned_transcript_845 other upstream 1125266 9938019 ~ 9938604 (+) True LOC120574658
TU209004 other downstream 1012035 12085861 ~ 12115192 (+) True G154254
TU209291 other downstream 1769597 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 1943160 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 2695193 13769019 ~ 13778623 (+) False LOC120573994
XR_005641808.1 other downstream 2695193 13769019 ~ 13775730 (+) False LOC120573994

Expression Profile