RNA id: XM_039824815.1


Basic Information

Item Value
RNA id XM_039824815.1
length 1574
RNA type mRNA
GC content 0.43
exon number 9
gene id LOC120574484
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 11055103 ~ 11058223 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGTGGTCTTTTCAAAAGTAGATGTGTGGACATGAATGTGAGATCAACTGTTTTGTGAACAAATGGGACTTTTGTGAAGCAGAATAGAGAAGTGAGTATTTGATGGAGCTGTGAACGATACTGCACTCAGCCTGCATGAGGAGGAAGTCACACCACAAACGTACACAGGTAGATGGTCATTTCAAACTTTGGCTACTACTAGTTAGGTCTATCTACTGAGGGCTGACATGTCTTTAGATGGGACAAAATTATTGTTTGAAGGCTTCctgcagaaaagaaaagataatTTGGCACACTTGAGAGGCTATTACTACATTTACACAGTGCAGTCGGTGCGAGAGGTCCAGAGAGTTGACAGCAAGCGCTTTATGTTTGAGATCTTCATGACCAATGGAAAGAGGAAATTGTTGGCAGCAGAGACCGCAGCTCTCAGAAAAGAGTGGGTAGGACTCCTATGGCAAGCCATGAATCTTTCTACCTCTGGGGTTTCAGACTCCAGAAGCACacaGCATGAAGTGTGTGAGCAGCGAGAGCGGTTAAACAGCAGCGCACCCATCTCCTCACACAGTGAGCGTGTAATGGAGTTGCTGCCTGCTCGGCCCCTCTCTGCCCCTGCCCCTACAGGCCACGTCCACCACAAGATCAGGAGCATCGCCACCCCCATCTGCCTGTCTGAGGAGCCGGAATGTGAAGAGGCCATGCAGCAAAACACACTTCCAGCCTGTAGCTACCAGCATTACAACAGTGACAGTCTCAACAGTCCACAATGGTCCAGCGGGTTGAGCAATGCAGAAGGCAGACAAGAAGGAGACTATGACATTTTACCACTTAGAAACACGGTATGTGAGATCAACGCTTCAACAGAGACAGACGAGGGCGTGTATGACTTTCCTCTCTCTTACAGGAGGTCTGCTGAACATCCAAACCCCACAGAGAGCATCTATGATGTACCGAGCTCTCTTTTGAGAAGGATGCCAGATCACACTTTAGAGGAGCAGCTGGAAGACGAAGTCTACTGGAGGATATGAGGTCCTGTTTGAGGACCGGAGGGTAGCGGTAACTCACCATACATGTAACTTTTGGACCAGACACAGAAGACTGTTGCTGCCTAATATTTatagctttgtgtttaattatATTACTGGTTTGAATGAAACAAACAGATATAATGAGTGCAAATATTGTTTGTCAATGTCTTTGTTAAACTTTTATATGCTAGACAACATCCAAAACCACAAAACATAGGTTCAAATGTGGtatttattttagtatttaCTTCAAGACCAAGAACAACGTAGTCATTTATAACTACAGAGAACACGCTGTACACAAATGTCAACATATACGCACTGTGGGCCAGTCACactgtggttaaaaaaaaaatgtatcatttacTTGCTTCACAGTTTAAAAGTATAGTATACCACCAACCATATTGCTGTATAACACACTTTGGACCGGTTTGAATGGAAATGGTTTGATTTTCTAAAACCCTTTATGGGTTCAATGGAATACAAAAACTTGTTGCAGTTACACaatgaaaggaaaataaaactTAGGCATGCTAACATTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208494 lncRNA upstream 46053 10973335 ~ 11009050 (+) True G153872
TU208521 lncRNA upstream 85259 10967630 ~ 10969844 (+) True G153892
TU208497 lncRNA upstream 122574 10931719 ~ 10932529 (+) True G153875
TU208383 lncRNA upstream 236931 10786862 ~ 10818172 (+) False G153817
TU208554 lncRNA downstream 20232 11078455 ~ 11079680 (+) True G153915
TU208555 lncRNA downstream 21529 11079752 ~ 11080658 (+) True G153916
TU208556 lncRNA downstream 23426 11081649 ~ 11082707 (+) True G153917
TU208690 lncRNA downstream 148818 11207041 ~ 11213341 (+) False LOC120574068
TU208736 lncRNA downstream 252202 11310425 ~ 11318493 (+) True G154038
XM_039824798.1 mRNA upstream 37 11037681 ~ 11055066 (+) False rhot1a
XM_039824805.1 mRNA downstream 5636 11063859 ~ 11073826 (+) False LOC120574482
XM_039824810.1 mRNA downstream 5647 11063870 ~ 11073826 (+) True LOC120574482
XM_039824804.1 mRNA downstream 5647 11063870 ~ 11073826 (+) False LOC120574482
XM_039824809.1 mRNA downstream 5647 11063870 ~ 11073826 (+) False LOC120574482
XM_039824808.1 mRNA downstream 5647 11063870 ~ 11073826 (+) False LOC120574482
TU208368 other upstream 302205 10752160 ~ 10752898 (+) True G153808
TU208172 other upstream 713480 10250377 ~ 10341623 (+) True G153646
TU207863 other upstream 988361 10065460 ~ 10066742 (+) True G153433
unassigned_transcript_846 other upstream 1080530 9973204 ~ 9974573 (+) True LOC120574581
unassigned_transcript_845 other upstream 1116499 9938019 ~ 9938604 (+) True LOC120574658
XR_005641865.1 other downstream 6199 11064422 ~ 11073826 (+) False LOC120574482
TU209004 other downstream 1027638 12085861 ~ 12115192 (+) True G154254
TU209291 other downstream 1785200 12843423 ~ 12846597 (+) True G154461
TU209346 other downstream 1958763 13016986 ~ 13020668 (+) False LOC120574968
XR_005641807.1 other downstream 2710796 13769019 ~ 13778623 (+) False LOC120573994

Expression Profile