RNA id: XM_039823904.1


Basic Information

Item Value
RNA id XM_039823904.1
length 3506
RNA type mRNA
GC content 0.51
exon number 23
gene id tbl3
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12028027 ~ 12049270 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGCTCAGATGACGTACAATGAGTGCGACTCGGGTATCAACATGCGGGATGGATGTGTTGACTTCAGGCAACGTGTGAAGTGAGAAATAAGTAATTTACATCACCACAGCAACCAAAATATTTAAGTTTGGGTATTTTACGTGAACAAGATGGCAAATACCAACCTTCAATTCAAAACAAATTATGTTGTCGAAAGCAAGATTGAACCTTTTTACAAAGGAGGAAAAGTGCAGATCAGCAAAGATGAAAAGTACATCTTTTGCACTTGTGGATCTCGTGTCAACGTTTTGGAGATCAGCACAGGGAAGATCGTCCACAGTGTGGAGCATGATGATCAAGAGGACATTACATCGTTCACACTCAGCTGTGATGATGAGATGCTGGTAACAGCTAGTAGAGCTCTGCTGTTAAAGCAGTGGGACTGGAGGCAAGCTCAGTGTACTCGCTCCTGGAGGGCCATTCATACTGTTCCTGTAGCCAGTATGACCTTTGACTCCACTTCTACTCTCCTGGCCACAGGTGGCTGTGATGGCACTATAAAGCTTTGGGATGTGGTGAAGCAGTACTGCACCCACAACCTTAAAGGCTCATCTGGCGTTGTGCACCTGGTCCAGTTCCACCCAGACATCAGCAGGCTGCagctcttctcttcctctctagACTGTGGCATTCGGCTGTGGGACCTGCGCTCCAgccggtgtatgtgtgtgctgcagAGCCACTACAGCGCTGTCACCTCACTCAGCTTCAGCCCCGATGGTGGCACCATGGTCAGTTCTGGCAGGGACAAGATCTGTACAGTGTGGGACCTGGAGACTCGGAAAGCCAAGAGAACTGTGCCAGTCTACGAGGCTGTGGAGGGTGTTGTACTGCTGCCTGAGGATAAGGACTTGTCTGAGATTGGAGTGAAGAGCAAAGACTTGCATTTCATCACTGCTGGAAGCAAAGGTGTATTGCGAGTATGGGAGGCCAGCACGGCGCGTTGTGTctacacccagacccccccctcccccctcaccGCTGTCTctgaggtggaggaggagagggacgaCGACCCCCGCAGTCTTACGTTTCTCCTTCATCTGCCCGCCTCCTCCAGACTGGCCACAGTCACAGCAGAACACAACATTGTGCTCTACCAGCTGCCTGGTCTCACCACGCAGCAGCAGTTTGTGGGATACAATGACGAAGTGCTGGACGTGAAGTTTCTGGGTAAAGGGGACAGCCACATCGTGGTGGCCACCAACAGCTGCCAACTGAAGGTGTTTGAGCTGCTCACCAACAGCTGCCAGATCCTCTATGGACACACAGATACTGTCCTCTCACTGGACGTGTTCAAAAAGGGTTTTCTCTTTGCGAGCTGTGCGAAGgACAGGTCGGTGCGTGTGTGGCAGATGGACAGTGACAGTGGACAGGTGCACTGTGTGGCTCAAGGCTCCAACCATGCTAACGCTGTGGGCTCCATCACCTGCTCCAGAATGAAAGCATCTTTCATAGTGTCTGGCAGTCAGGACTGCACTGTGAAGGTGTGGGATCTACCAGCAGACTTATCTACGAGAGGGGCGGACGTACATCAGCTGACCCCCCGTGCCACAGAGAAGGCACACGATAAGGATGTAAACAGCGTGGCGGTGTCGCCCAATGACAAACTGCTGGCTTCAGGCTCCCAGGACCGCACAGCCAAGCTGTGGTCGCTGGCGGAGGAGGGGAACGTGGGCCTGCTGGGGGTGTTTAGGGGCCACCGTCGCGGCGTCTGGGCCGTCTGCTTCTCTCCTGTCGACCAGGTGCTGGCCACGTCCTCCGCAGATGGCGCCACCAAACTGTGGAGCCTGCAAGACTTCAGCTGTCTGAAGACATTCGAGGGTCACGATGCATCGGTTTTGAAGGTCATCTTTGTGAGCCGAGGCACTCAGCTGCTCACCAGTGGCTCAGATGGTTTGGTAAAGCTGTGGACCATAAAGACCAACGAGTGTGTAAAGACGCTGGACGCCCACCAGGACAAAGTGTGGGGTCTCCATGTCAGCCGCAAAGACGACAAGGTGGTGACTGGTTCAGCAGACTCTAACATCACCGTTTGGGTGGATGTGACTGAAGTAGAGCTGGCAGAGGAGCAGGCCAAGCAGGAGGATCTGATACTCAAGCAGCAGGAGTTGTCCAACCTGCTCCATGAGAAGAAGTACCTGAAGGCCCTGGGTCTCGCCATATCACTGGACCAGCCTCACACTGTGCTCACTGTGATCAAAGCGATCCGTCAGGTGGAGAATAGCGGCGAGCTGTTGGAGAAGACAGTACTGAAACTCCGAGTGGATCAGAAAGAGTCTCTCCTGCGCTACTGTGCTGTGTGGAACACCAACGCCAGAAACTGTCAGGATGCCCAGGCCGTCCTCCAGGTGCTCCTCACACACCTGCCACCTGAGGAGATCCTGCAGTATCAGGGCGCCCGAACCCACCTCGAGGGACTCATCCCATACACagagagacacatgcaGAGGATTGGTAATCTGCTGCAGGCGTCCATGTTTTTAAACTACATGTGGCAGAAGATGAGAGTGGCCGGAGCACCATCCAGCATGGGCCAAGACGAAGAAATGGATACCACTCCGCTTGCACAGCCTTTCTTTATGATTGACAAGGAGAAAGGAATGGGCATCAGCGATGATGAGAAACGAGATGGAGATGACAGCGATGGGGGACAAGATGAAGATCCAAATTGCCCAGTTAAagaagcagaggaggaggatgacgaTGAGGTCAGTTCCACCAAGAAAGCCTCCGCTAACGGCGGGCGAGTAGAAAACGGCGAGCGCACCAAAACAAATGGCAACCACCACTCTGAAAGTGAGGAAAGTTCAGCAGAGGAAGCGCTGGAAGAAGAAGATCAAACAACGGTAAAGGTGAAATGTCTCCCTGTTTCTTCCACTCCACAATGCCAGACTTTTGCAAGCTGACGAGGATCTCCAAGCTGGTAACCGATGACTCACTCCCTGAAAATAAAAAACCCAGGAGGGGTGATCTTATCTCGGACCTTTAGCTGGAGTGACTCCCTGAATGATTAGCAGTGcaggaagagatggagagacaggTGTGGAGTGATGGTGATAAATATAATAGGCCTCTCTGTGCATTCCCATGTCTCAGCAGCTCCAAAATACTTTGTCTTGTGACAGTTACTAAATTGTGCATCGGTTCATCCATTCAGAGTTTGAGCAGAATTTGAAGAAACTTAACCATCCTAATTTCCTCAGACAAAGTGGACATTAgggaagaaaggaggagagactGAAGGAAGACAGACCTGCATTAACAATCGGGCATTGAGCCAGGGTTATCCTCCCCCACTGCAGAAACCAGCACCCATtgtctagtttttttttatgttgtgtaGTCCTGATCTACTGGCTCAACCACAACACAAAAGGTTCCTTTCATAACCacagattgtttttttaatgtcatgACTACAAatgtttataaaataaaaatctgttctTTGTGATTTAAAGTTA

Function

GO:

id name namespace
GO:0030098 lymphocyte differentiation biological_process
GO:0006364 rRNA processing biological_process
GO:0048538 thymus development biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:0032040 small-subunit processome cellular_component

KEGG:

id description
K14555 UTP13, TBL3; U3 small nucleolar RNA-associated protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU208995 lncRNA downstream 5523 12022297 ~ 12022504 (-) True G154246
TU208994 lncRNA downstream 5837 12021527 ~ 12022190 (-) True G154245
TU208970 lncRNA downstream 15547 11969405 ~ 12012480 (-) True G154231
TU208913 lncRNA downstream 197844 11829944 ~ 11830183 (-) True G154187
TU208899 lncRNA downstream 378103 11643117 ~ 11649924 (-) True G154175
TU208997 lncRNA upstream 3536 12052806 ~ 12055204 (-) True G154248
TU209010 lncRNA upstream 36715 12085985 ~ 12090019 (-) True LOC120574419
TU209013 lncRNA upstream 37733 12087003 ~ 12090981 (-) False LOC120574419
TU209033 lncRNA upstream 82116 12131386 ~ 12155812 (-) True G154275
TU209066 lncRNA upstream 134341 12183611 ~ 12183825 (-) True G154305
XM_039824516.1 mRNA downstream 19491 11984719 ~ 12008536 (-) False LOC120574261
XM_039824514.1 mRNA downstream 19491 11984719 ~ 12008536 (-) False LOC120574261
XM_039824512.1 mRNA downstream 19491 11984719 ~ 12008536 (-) False LOC120574261
XM_039824515.1 mRNA downstream 19491 11984719 ~ 12008536 (-) False LOC120574261
XM_039824513.1 mRNA downstream 19491 11984719 ~ 12008536 (-) False LOC120574261
XM_039823910.1 mRNA upstream 6568 12055838 ~ 12057801 (-) True ndufb10
XM_039823903.1 mRNA upstream 13510 12062780 ~ 12075817 (-) True LOC120573975
XM_039825117.1 mRNA upstream 31205 12080475 ~ 12083567 (-) False LOC120574725
XM_039825116.1 mRNA upstream 31205 12080475 ~ 12083564 (-) True LOC120574725
XM_039825118.1 mRNA upstream 33182 12082452 ~ 12083704 (-) False LOC120574725
unassigned_transcript_847 other downstream 541102 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 802481 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 890545 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641867.1 other downstream 947421 11078587 ~ 11080606 (-) False LOC120574486
XR_005641884.1 other upstream 378234 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_848 other upstream 793623 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 907252 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 924062 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 1286179 13335449 ~ 13421951 (-) False prkar1b

Expression Profile