G154248 (rps2)


Basic Information

Item Value
gene id G154248
gene name rps2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12052806 ~ 12055204 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU208997
AGtaacaaaaatacacattacATGTCGTTTCAGAATGTTTATTCAACAATTCTCTGTACAAAAAGTTTAGGAGGGAGGGGCCTGGACAGGCTGTCCTCTCTGCACAGACACCCTGGAGTGAGTCTTGGCCAGATGGTCAGTGAACTCCTGGTAGGGAGACTTTGTGAAGACCGTCTCCTTCCACAGATCAGGGGTCAGGTAGCTGTAGGTCTTGGAGATGGCATCAAAGGTGGCCTTGGCTGATGaggaaattaaaaagaaataatgagTAGATGCTTAAGACGGAGCTCCAAAACACAGAGCtgcagtcttttcttttttaaaactgtAGAGCACTGAAAAGGGGAACAGAGGAGACCATTAGACGGTCTCTCTGCCGTGCATTACAATACTcgtttctttctctcctgataACGACAACTACACCACTGCAGAGGTGAAGCTGAGCAGAGCAAGGAGaaaaccagacagacagacacgcaacCATCAGAAGAATCTTACCGAAGTTGCCAAGGGTGGCGGTGCAGCCCCTTGCAGAGGTGTAGCAGTCATCGATACCAGCCATCATGAGCAGCTTCTTGGGCACAGGGGCGGACACAATGCCAGTACCACGGGGGGCAGGGATGAGACGCACCAGGACAGAGCCACAGCGGCCAGTCACCTTGCAGGGCACGGTGTGGGGCTTGCCGATCTTGTTACCCCAATAACCTCTCCTGACGGGGACAATAGACAGCTTGGCCAGGATGATGGCACCACGGATGGCTGTGGCCACCTCTTTGGAGCATTTCACCCCCAGACCCACATGGCCATTGTAGTCGCCAATGGCAACAAAGGCCTGTAAACAAAAGCCAACAATGTCACATCTGAACCAACAACATGGGATGTTAACGCTGATTGTTTATTACAGAGTTGAGTTAATAACTCACCTTGAACCTGGTGCGCTGACCAGCCCTAGTCTGCTTCTGGACAGGCATGATCTTGAGCACCTCATCCTTCAGACCAGAACCCAGGAAGAAGTCGATGATCTCAGACTCCTGCagggaaaataaaacaaatagatTTGCTATAGTAACAAACCCAAATCCAACATAAGGTGTTGCATGCATATCCATGCAGTTCTTAATATACTTGCAAGTATTAAGATAACCTCCAAATCAGAGCAAAGCATCTTCTTATATAAAATCTATGATCTTTGAAAAACCAAAGTAATTTTGTTCCATTTGTCCACTCCCATGTTTCAAGTATGTTCACACACAAGTTATTCTTTTGCGTTTTATAAAATGAGAAAAGACCAGACATCTAATTttgggctgcacaattaatcgcaactttatcaaaatatggactagtgcaatattcaAATCGCAGGGGGGGGTACAGATCTTCGCAAAAATCACAATCATTTCAATGagaagaactatacaaaaatgatcattccctcagTATAGTGAATCCTATTGCAactacatattttcctcatatcgtgcagccctctCTAATTTTCAGCTATTTGCTATAGGAAGGATTCAAAAGTTGTCAGGATGTATTTTTCAGAGAAAACTGTTTAGCTCTATGACTTTGAATAGGATGACGTACAAGTTGGGGCCAACAAGAAACAGTGTTATTAGGCTTTACATTAACAGGGCCATCCTGGGGTCCCCTGTTCGTATCAGAACGTCTTTATTTAACGTTAATAGTTGGAAGTCTGTCACTGTGGTCACCCTTACACACTGCTTACCTTGATGGGCAGAGAGTACAGGTAGATCTCCTCCAGGGACTTGATCTTCATGTCCTTAACCAAGCGGCCCAGCTTGGTGACTGGCACCCATTCCTTGTCCTCGGCCTTGCCGCCCCGTGCACCGCGGCCCCGGCCACGGCCTCTGCCGCGTCCACGGCCCCTGCCGCGGCCACCTGCCCCAAAACCTCCGCGAAAACCTCCTCTACCACCGGCGTCGTCCGCCATTTGGTGATCGTAATAAC

Function

symbol description
rps2 Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Is expressed in epidermis; mesenchyme; nervous system; pectoral fin; and pharyngeal arch 3-7 skeleton. Orthologous to human RPS2 (ribosomal protein S2).

NR:

description
40S ribosomal protein S2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU208997 True 1980 lncRNA 0.47 3 12052806 12055204

Neighbor

gene id symbol gene type direction distance location
tbl3 tbl3 coding downstream 3536 12028027 ~ 12049270 (-)
LOC120574261 tom1l2,LOC104918838,LOC103361751,LOC100706850,LOC102776585 coding downstream 44270 11984719 ~ 12008536 (-)
srebf1 srebf1 coding downstream 69436 11971044 ~ 11983370 (-)
nptx2a nptx2,LOC102777833,LOC101477389,LOC100706047 coding downstream 439520 11601333 ~ 11613286 (-)
baiap2l1b baiap2l1,LOC103367811 coding downstream 464573 11557861 ~ 11588233 (-)
ndufb10 ndufb10 coding upstream 634 12055838 ~ 12057801 (-)
LOC120573975 LOC104957814,LOC103361744 coding upstream 7576 12062780 ~ 12075817 (-)
LOC120574725 NA coding upstream 25271 12080475 ~ 12083704 (-)
fahd1 fahd1 coding upstream 72263 12127467 ~ 12128598 (-)
narfl narfl coding upstream 82864 12138068 ~ 12142317 (-)
G154246 NA non-coding downstream 30302 12022297 ~ 12022504 (-)
G154245 NA non-coding downstream 30616 12021527 ~ 12022190 (-)
G154231 NA non-coding downstream 40326 11969405 ~ 12012480 (-)
G154187 NA non-coding downstream 222623 11829944 ~ 11830183 (-)
G154175 NA non-coding downstream 402882 11643117 ~ 11649924 (-)
G154275 NA non-coding upstream 76182 12131386 ~ 12155812 (-)
G154305 slc5a11,LOC102796461 non-coding upstream 128407 12183611 ~ 12183825 (-)
LOC120574757 NA non-coding upstream 306035 12361239 ~ 12373994 (-)
G154368 NA non-coding upstream 345048 12400252 ~ 12401475 (-)
LOC120574719 NA non-coding upstream 511974 12567178 ~ 12567810 (-)
G154033 NA other downstream 827260 11203450 ~ 11225546 (-)
tnrc6c1 LOC103361861 other downstream 915278 11098316 ~ 11137528 (-)
LOC120574486 NA other downstream 972199 11078545 ~ 11080607 (-)
LOC120574455 NA other downstream 1261241 10784112 ~ 10791565 (-)
gtpbp1 gtpbp1,LOC104924447,LOC102799794 other downstream 1662630 10352158 ~ 10390176 (-)
LOC120574419 NA other upstream 30781 12085985 ~ 12090981 (-)
cep112 NA other upstream 372300 12427504 ~ 12565471 (-)
LOC120575506 LOC100697827 other upstream 680240 12735444 ~ 12737483 (-)
iqck NA other upstream 899770 12954974 ~ 12972829 (-)
sun1 sun1,LOC104947709,LOC102193096,LOC103360714 other upstream 918056 12973260 ~ 13012781 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location