RNA id: XM_039824942.1


Basic Information

Item Value
RNA id XM_039824942.1
length 4022
RNA type mRNA
GC content 0.49
exon number 20
gene id arhgap17b
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 12186097 ~ 12213659 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAAGGCACTTCCTCCTTCCTACCAACCACACTGGTTGGTTGCGTCCAAACCAGTTTAATAGGAAGTCGGATACTCGTGTCAATGGGGATCCAGCAGCTTGTCATGAGTTGTTTCAACTAACCTCTTTACGTTTCTTCCTACAGTCAAATGTTACCGAGTTCAATCAGTAAAACCATCCAGTTGTAGTGCGTAAAAGTGGTCGGAGCGCAGCCCTTTCAGCCACAATGGCTGCGACGTAGCGCAACTTTTAGATCCACGGTGGATGAACGACAGCGCTCCGAGGTGCCGCTAACTTTTACACACTTGCAGGAGACACAAAGGAGgaaaaaacatgaagaaacagttTAATCGCATGAGGCAGCTTGCCAACCAGACAGTTGgaagGGCTGAGAAAACTGAGGTGCTAAAGGATGACCTCCTACAGATCGAGAGGCGGTTGGAGTTGGTGCGTTTGGTgtctcacaacacacacaagaggCTGGTGTCCTGTCTGCAGAGTCAGCTgggcacagacacagagaagaGACATAAAAAGCTGCCCCTGACGATGCTGTCCCAGGCCATGCAGGAGGGAGGCATTCAGCTGGGAGACGAGAGTCTGATTGGcaaGATGATGGATGTGTGTGGGGAGGCTGAAAGCAGACTAGCGGCTGAACTGATGCACCATGAAGTCCAGATTGAGAGAGACATCCTGGATCCTCTCAACCAGCTGGCTGAGGTTGAGATTCCCAATATACTAAAACAGCGAAAACAACTCGCCAAACTGGTTCTGGACTATGACTCGGCCAAGACGAGGTGGTACCAGGCAACCAAGTCCAACAACCAGGCTATGGCAGCTAAAACTGATTCGCTCAAAGACGAGATGGACGAGGCTCTCAACAAAGTAGAAATATGCAAGGACCAGCTCGCTGCAGATTTGTACAACTTTGGTTCCAAAGAGGGAGATCATGCGCGCTATTTTGTCATGTTATTAGAGGCGCAGGCAGACTACCACAGGAGGTCTCTGGCAGCTCTGGAGGCAGCTATACCGACTATCCAATTACAGCAAGACTGCTGGATGGAGAAGCCGGCATTCGGCATGGCTCTGGAGGAACACCTGAAGAGGAGTAACCGTGAGATCGCTCTGCCTTTGGAGGCCTGCGTCATGATGCTGCTGGAGACCGGCATGAAGGAGGAGGGTCTCTTCAGAATAGCTGCCGGAGCTTCCAAACTGAAGAAGCTCAAAGCGGCGCTGGACTGCTCCACCTCACAGCTTGAGGAGTTCTACTCTGATCCCCACGCTGTCGCCGGAGCCCTGAAATCCTACCTTAGGGAACTTCCTGAACCTCTAATGACTTTTGGCCTGTACGATGAGTGGACACAGGCCTCCAATGTGTCTGACCCTGACAAGAGGCTTCAGGCCTTGTGGGTGACATGTGACCGTTTGCCAAAGACTCACAAAGCAAACCTCAGGTATCTGGTGAAATTTCTGGCTAAACTGGCTCAGAACAGTGAGGTTAATAAGATGACTCCCAGCAACATCGCCATAGTCCTTGGGCCCAACCTGCTATGGGCAAAGACTGAGGGGACTCTGGCAGAGATGGCAGCAGCCACATCTGTCCATGTGGTCGCCATCATTGAGCCCATTATCCAGCATGCTGATTGGTTCTTCCCTGAAGAGGTGGACTTCAATGTGTCAGGCATGTTTGCCATGCCCACCCACTCAGCCACACCAGACCCCGATCCCGTCCTGGATAGGAAACGCCCAGGCAGCCTAGTGGGGCAGGACGGGGACAGTCACACCCCCCGTAAAGACAGCACTGTTAACAAACAGCCGGAGCCCACTCCACGTAGAACCAACACTGTAAATAGAAAGCAGCCACAGCTAACCTCACCCACCTTCCAACCCCCATTGCCCCCTCTGGAAGCCGGGGGTCCTGCCCAGCCTGAGCCCCTGTCCCAGCTCCCGTCCCCGGCTACAGAGGCTGAGCAGCCTGGCTTGAGGGGTGCTAGTAGTGGTGTTGGTGTTGGTCTGGGTGGTGGGGTCCAGGTAGCCACAGTGCAACCTCAGGTTGTAACCCAGCTCAGCGCAGAGGAGAGCAGCCCAGCCCGTGAGCTCATGTccacccctcctccccagagGAATGGTTCAGTTCTTACAGTAGGAACCCCCCATTCTCAGGGTGGATCCAGGGGGCCTAGTCCACACATGGTTCGCAGAGGCACAAAGAAGCAGGCCCCAGCCCCGCCCAAACAATCCAGCGCCTTTGCCTCCCAGCCCAGCAACACCCAGATATCCGGCTCCACTCATCACCCACCCATCACCCCCAGACGCCAACTCGGCAAAGACAGCCCAATCCATGCTCCGAGCCACCCGCCCCCACAGCCTCCTCAAGCCCACCAGGCTCAGGGGGAGTCAGAGCCTTCTCCCCCAAGAACTCCCACCCCTCCTGACACCCCGCCTCATGATGGATCGCACTCTATCCCGCCGTCTTTCTACCACTCTGGATCTCTCCCTCGCCCCTCCAGGCCGGCACCCAGGCCACGGCCTCGACCCAGCATGCCGCCGCCCCCACAACCTGCAGTCAATGCCAGTGACGACGGTAATGGCATTTGCGGCTCCGCCTCCAAAATAATAACAGACGGAGGCCTATTCCTAAAGGGGATTGGACGAGCCCTCATCCCTGAGGTGATTGCGGACCAACAAGGAGAGAGCTCTGCTGGTCAAGAGCCCGCCACCACCCCAGCCCAGCAACTAAACCCTCAGACCCAGACAGAGTTCACCGCTCTGTGAGGAAAAAGAGGGATCGCTCTCATCAAACTCTTCCTTCACACAGATGGTTCATGTAACAGATTTGAATGTTTAGAATCAAAAATCGACCGGTAACTCAAACGCTTCGGTTCACTCCAGCTCGTCACGCTCCACTCACAGGATGCCAGAGTGctttctggaaaaaaaatagCTGCCTTTTCTTCGGTTTTGCTGAGAGTCAAACCAGAGACCTAAAACCACAAAACTCATATCCAGCTATTAGTTTTATATCACACTCCTTTTGTTCTAAATACTGCTGGGTATTTTAAGATTGGACTGCAGAGCCTTGCTAGCCTCAACGCTTATTGAACTTAAtctgaatatactgtatagcaGCTCAACTCAACAGGTGCTAAGCTTTCacttgtctccttttttttttttttatcttgctgTCGATACTATAGATTCAGTGCTATGAATGTTTTTGGAGACAGAAATCTGTGAATCTGGTTTTAGCACCACATAGACCCGACAactagtattttttttttttattcagcagAGTTGTGTGGAGATATTTGAGTGTTAGCCAGCCACTGATGATCTATTTATCATTTTCCAATTTATCAGTTTCAACTGCCTTTTTTAGAAGGGCTTTTCAATAATTGTCACACACTTTAGCACCGCACTAAACATACTAGTGTAAAGGACCAAAGAAATGGAAATGGGCCAAAGGAAATTAAATAAAGATTTAGAGCTGCTCGGCTTCAATTATGGTTGTTAATGACCAAATATTTTGTGCAATACAAAATGCAGTTGTTCAGTGGTGTCCTCTCCACAGTACACATGCTGTATTTTTGGTATTTCAGATGGTTTTCCTTCTAGTAATCCAGTGGGGtagagttttattttgttttctatctGAATTTTGATTCCAACTGACCTGATTTATCATGCTCAAAATGACTTAGATGCTCAAAGATTAGCTTTTTATCATttaaagggattttttttctaaCAGATTGATTGTGATAAATGCATTTTCAATACATAGCGTGTAACTGATCACTCCCCTCAAAGCTATGACCAAATACAGCCAAATTCTTCTTTGTGTATAATTTTTACTGAAACTGACAATCTTTAGCTTGTTGGGGTGTTTTTCAGCTCtttgtttctttccttttttttttttttcttctcagcaTTTGTATGTTGGCTTTTCTGCACATAATGCATCATACAATGCATCATTACACTTGATAATTAAAGATTGTTCAACATTGTAAA

Function

GO: NA

KEGG:

id description
K20638 ARHGAP17, RICH1; Rho GTPase-activating protein 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209066 lncRNA downstream 2272 12183611 ~ 12183825 (-) True G154305
TU209033 lncRNA downstream 30285 12131386 ~ 12155812 (-) True G154275
TU209013 lncRNA downstream 95116 12087003 ~ 12090981 (-) False LOC120574419
TU209010 lncRNA downstream 96078 12085985 ~ 12090019 (-) True LOC120574419
TU208997 lncRNA downstream 130893 12052806 ~ 12055204 (-) True G154248
XR_005641900.1 lncRNA upstream 147580 12361239 ~ 12373994 (-) True LOC120574757
TU209165 lncRNA upstream 186593 12400252 ~ 12401431 (-) False G154368
TU209168 lncRNA upstream 186593 12400252 ~ 12401475 (-) True G154368
XR_005641891.1 lncRNA upstream 353519 12567178 ~ 12567810 (-) True LOC120574719
XR_005641890.1 lncRNA upstream 354560 12568219 ~ 12568696 (-) True LOC120574718
XM_039825748.1 mRNA downstream 43780 12138068 ~ 12142317 (-) True narfl
XM_039825780.1 mRNA downstream 57499 12127467 ~ 12128598 (-) True fahd1
XM_039824677.1 mRNA downstream 96616 12086991 ~ 12089481 (-) False LOC120574419
XM_039825118.1 mRNA downstream 102393 12082452 ~ 12083704 (-) False LOC120574725
XM_039825116.1 mRNA downstream 102533 12080475 ~ 12083564 (-) True LOC120574725
XM_039823900.1 mRNA upstream 7510 12221169 ~ 12226568 (-) True LOC120573971
XM_039824678.1 mRNA upstream 15458 12229117 ~ 12244745 (-) True cbx4
XM_039825185.1 mRNA upstream 61708 12275367 ~ 12297433 (-) True tbc1d16
XM_039825184.1 mRNA upstream 61708 12275367 ~ 12294318 (-) False tbc1d16
XM_039825187.1 mRNA upstream 61708 12275367 ~ 12287398 (-) False tbc1d16
unassigned_transcript_847 other downstream 699172 11486854 ~ 11486925 (-) True trnaq-cug_14
TU208722 other downstream 960551 11203450 ~ 11225546 (-) True G154033
TU208632 other downstream 1048615 11110968 ~ 11137482 (-) False tnrc6c1
XR_005641867.1 other downstream 1105491 11078587 ~ 11080606 (-) False LOC120574486
XR_005641884.1 other upstream 213845 12427504 ~ 12565471 (-) False cep112
unassigned_transcript_848 other upstream 629234 12842893 ~ 12842974 (-) True trnal-uag_2
XR_005641885.1 other upstream 742863 12956522 ~ 12972810 (-) False iqck
TU209391 other upstream 759673 12973332 ~ 12979685 (-) False sun1
XR_005641817.1 other upstream 1121790 13335449 ~ 13421951 (-) False prkar1b

Expression Profile