RNA id: XM_039824993.1


Basic Information

Item Value
RNA id XM_039824993.1
length 6238
RNA type mRNA
GC content 0.46
exon number 23
gene id LOC120574577
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9940523 ~ 10027725 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCGATATAGTAGTGGCTCTGGCTACGCTTTTGACTACTGGGGGAAAGGCACCATGGTTACCGTCACCTCAGCCACTCCAACTGCACCAACTGTGTTTCCGCTGATGCAATGTGGTTCTGGGACCGGAGACATGGTCACTCTTGGCTGCCTTGCCACCGGCTTCACACCCTCCTCACTGACCTACGCATGGAACAAAAATGGGGCTGCCTTGACAGACTTCATTAAGTACCCTccggtgcagaaagacaacgtTTATTCTGGAGTCAGTCAAATCCGAGTGAGCAGACAGGACTGGGACGCAAGGGAGATTTTCAAATGTGTCGTGGAACATGCATCAGGACAGCCAAAAGAGGTTATTTTCCGAAAGGAAGTTGATCGGATCGTCTATCCAAACATCACATTACACCCTGTCTGGGAAGGTGAATATGGGGCCTCACCAGTCAGACTCCTCTGCACCCTAAGAGGCTTCTGCCCAGACGGACTGAGTGTGGAGTGGAAGCAGGACAACCAGCCTCTAACTATTGCCACAATCACAACAAAGCTGCAGAGTGTGGAGGACAAAACCTTCAGTCTAAGCAGTGAGATTGAGCCAAATAGGACTGTTTGGGCATATGGCTCAAGTTTTACATGCAAGTCCATTCACAAGAATCaggaatttataaaaaaaataagtatttgtCAAATCCATGGAAGTGCCCCTCCTTCCATCCAAGTGGAGATCCCCAGCTTTAAGACAGTAATGACAGAATCCACTAAGTCTGTGAACGCAACATGTTTGGTTCCCACTGTTCTTGATGCCAAGGTGACCTGGCTGATGGATGGGAAACCGAGTACAACAGCGAGCCAGGTCAAAAACACAACTCATATAGTCAGTAAAGTGACAGTTTCTTTAAGTGAATGGAAACAACTCAAGTCTATAACATGTAAAGCTGAACATAAGTGCTTCCCATCTACTGAGAGGACTGTGAGTGTTGCAGGGCCTGCAGTTACAACCCCGTTGGTTGAGATTAGAAGATCCCTCAAAGATTTGTTGAAGATGGACAGCGCAGTGCTGGAGTGTGATGTCACACAACTCTCATCACGTGACCTGTACGTCACCTTTCAGGCCAACAGTGCTGACATCTCTGACAAACAGTATGTTGATCTTCCTGAAGGCCCAGGCCTCCATTCAATCAGCAGAAGCTGCTCTATCCCTACACATTACTGGAAGAAAGACACaaatttcagctgcacagtgAACCAAGGCTTCTCTGGCAACTTCAAGTCAAACTCAGCTGGCAATGTTTTTGTGGACCCATCAATGGAACTTCTTCTGGCCCCCAGTGAAGAATCAGAACAACAGAGGCTCTTATGCTCTGCATGGGGCTTCAACCCTCAAATTAAATGGTCTACTGAGTCTCAGCAAAGATCTTCATCAACTTATGAACTCAGCATGGGTGCAGATGGACGTGTGGCAGTAACCAGTCATCTTCATATCCCTCACACAGAGTGGAGCACAGGGAAGGTGTTCACTTGTGAAGTAACTGACAAGTCTCtgaaaacaaatgtgaaaaagGAGATCAGCCTCTGCTCAGTTTATTCAAGTGGCCCTCCTTTCATCCACGTGGAGAGTCCCAGCTTTAAGACAGTAATGATGACAGAATCCACGGAATCCGTGAAATCAACATGTTTGGTCCGCACTGTTCTTGATGCCAAGGTGACCTGGCTGATGGATGGGAAACCGACTACAACAGCGAGCCAGGTCAAAAACACAACTCATATAGTCAGTGAAGTGACGGTTTCTTTAAGTGAATGGAAACAACTCAAGTCTATAACATGTAAAGCTGAACATAAGTGCTTCCCATCCACTGAGAGGACTGTGAGTGTTGCAGGGCCTGCAGTTACAGCCCCATTGGTTGAGATTAGAAGATCCCTCAAAGATTTGTTGAAGATGGACAGCGCAGTGCTGGAGTgtgatgtcacacagctctCATCACGTGACCTGTACGTCACCTTTCAGGCCAACAGTGCTGACATCTCTGACAAACAGTATGTTGATCTTCCTGAAGCCCCAGGCCTCCATTCAATCAGCAGAAGCTTCTCTATCCCTACAAATTACTggaagaaagagacaaatttcagctgcacagtgAACCAAGGCTTCTCTGGCAACTTCAAGTCAAACTCTGCTAGCAATGTTTTTGTGGACCCATCAATGGAACTTCTTCTGGCCCCCAGTGAAGAATCAGAACAACAGAGGCTCTTATGCTCTGCATGGGGCTTCAACCCTCAAATTAAATGGTCTACTGAGTCTCAGCAAAGATCTTCATCAACTTATGAACTCAGCATGGGTGCAGATGGACGTGTGGCAGTAACCAGTCATCTTCATATCCCTCACACAGAGTGGAGCACAGGGATGGTGTTCACTTGTGAAGTAACTGACAAGTCTCtgaaaacaaatgtgaaaaagGAGATCAGCCTCTGCTCAGTTTATTCAAGTGGCCCTCCTTTCATCCACGTGGAGAGTCCCAGCTTTAAGACAGTAATGATGACAGAATCCACGGAATCCGTGAAATCAACATGTTTGGTCCGCACTGTTCTTGATGCCAAGGTGACCTGGCTGATGGATGGGAAACCGAGTACAACAGCGAGCCAGGTCACAAACACAACTCATATAGTCAGTGAAGTGACGGTTTCTTTAAGTGAATGGAAACAACTCAAGTCTATAACATGTAAAGCTGAACATAAGTGCTTCCCATCCACTGAGAGGACTGTGAGTGTTGCAGGGCCTGCAGTTACAACCCCGTTGGTTGAGATTAGAAGATCCCTCAAAGATTTGTTGAAGATGGACAGCGCAGTGCTGGAGTGTGATGTCACACAACTCTCATCACGTGACCTGTACGTCACCTTTCAGGCCGACAGTGCTGACATCTCTGACAAACAGTATGTTGATCTTCCTGAAGCCCCAGGCCTCCATTCAATCAGTAGAAGCTTCTCTATCCCTACAAATTACTGGAAGAAAGACACaaatttcagctgcacagtgAACCAAGGCTTCTCTGGCAACTTCAAGTCAAACTCTGCTGACAATGTTTTTGTGGACCCATCAATGGAACTTCTTCTGGCCCCCACTGAAGAATCAGAACAACAGAGGCTCTTATGCTCTGCATGGGGCTTCAACCCTCAAATTAAATGGTCTACTGAGTCTCAGCAAAGATCTTCATCAACTTATGAACTCAGCATGGGTGCAGATGGACGTGTGGCAGTAACCAGTCATCTTCATATCCCTCACACAGAGTGGAGCACAGGGATGGTGTTCACTTGTGAAGTAACTGACAAGTCTCtgaaaacaaatgtgaaaaagGAGATCAGCCTCTGCTCAGTTTATTCAAGTGGCCCTCCTTTCATCCACGTGGAGAGTCCCAGCTTTAAGACAGTAATGATGACAGAATCCACGGAATCCGTGAAATCAACATGTTTGGTCCGCACTGTTCTTGATGCCAAGGTGACCTGGCTGATGGATGGGAAACCGAGTACAACAGCGAGCCAGGTCAAAAACACAACTCATATAGTCAGTGAAGTGACGGTTTCTTTAAGTGAATGGAAACAACTCAAGTCTATAACATGTAAAGCTGAACATAAGTGCTTCCCATCCACTGAGAGGACTGTGAGTGTTGCAGGGCCTGCAGTTACAGCCCCGTTGGTTGAGATTAGAAGATCCCTCAAAGATTTGCTGAAGATGGACAGCGCAGTGCTGGAGTgtgatgtcacacagctctCATCACGTGACCTGTACGTCACCTTTCAGGCCAACAGTGCTGACATCTCTGACAAACAGTATGTTGATCTTCCTGAAGCCCCAGGCCTCCATTCAATCAGCAGAAGCTTCTCTATCCCTACAAATTACTGGAAGAAAGACACaaatttcagctgcacagtgAACCAAGGCTTCTCTGGCAACTTCAAGTCAAACTCTGCTGACAATGTTTTTGTGGACCCATCAATGGAACTTCTTCTGGCCCCCAGTGAAGAATCAGAACAACAGAGGCTCTTATGCTCTGCATGGGGCTTCAACCCTCAAATTAAATGGTCTACTGAGTCTCAGCAAAGATCTTCATCAACTTATGAACTCAGCATGGGTGCAGATGGACGTGTGGCAGTAACCAGTCATCTTCATATCCCTCACACAGAGTGGAGCACAGGGAAGGTGTTCACTTGTGAAGTAACTGACAAGTCTCtgaaaacaaatgtgaaaaagGAGATCAGCCTCTGCTCAGTTTATTCAAGTGGCCCTCCTTTCATCCACGTGGAGAGTCCCAGCTTTAAGACAGTAATGATGACAGAATCCACGGAATCCGTGAAATCAACATGTTTGGTCCGCACTGTTCTTGATGCCAAGGTGACCTGGCTGATGGATGGGAAACCGAGTACAACAGCGAGCCAGGTCAAAAACACAACTCATATAGTCAGTGAAGTGACGGTTTCTTTAAGTGAATGGAAACAACTCAAGTCTATAACATGTAAAGCTGAACATAAGTGCTTCCCATCCACTGAGAGGACTGTGAGTGTTGCAGGGCCTGCAGTTACAGCCCCGTTGGTTGAGATTAGAAGATCCCTCAAAGATTTGTTGAAGATGGACAGCGCAGTGCTGGAGTgtgatgtcacacagctctCATCACGTGACCTGTACGTCACCTTTCAGGCCAACAGTGCTGACATCTCTGACAAACAGTATGTTGATCTTCCTGAAGGCCCAGGCCTCCATTCAATCAGCAGAAGCTTCTCTATCCCTACAAATTACTGGAAGAAAGACACaaatttcagctgcacagtgAACCAAGGCTTCTCCGGCAACTTCAAGTCAAACTCTGCTGGCAATGTTTTTGTGGACCCATCAATGGAACTTCTTCTGGCCCCCAGTGAAGAATCAGAACAACAGAGGCTCTTATGCTCTGCATGGGGCTTCAACCCTCAAATTAAATGGTCTACTGAGTCTCAGCAAAGATCTTCATCAACTTATGACATCAGCATGGGTGCAGATGGACGTGTGGCAGTAACCAGTCATCTTCATATCCCTCGCACAGAGTGGAGCACAGGGAAGGTGTTCACTTGTGAAGTAACTGACAAGTCTCtgaaaacaaatgtgaaaaagGAGATCAGCCTCTGCTCAgTAACTCCGGCATCATCTCAGATGCTTGGCATATATGTTCAGGGACCACCACTCCAGGAGCTTCAGAACAAGGGTCCGGTGACTATTACCTGTCTTCTAGTCGGCCCTTCTCTTAATGATTTCTCTGTCACCTGGAAAGTAGATGGGAAAAGTTATTCCCTCAATGTCCATAAGGAGCCACCAGTGAGTCACAGCAATGGGACGGAGACTTTGCGGAGCTCCCTCGATGTGTTAGCGGAGGATTGGCATGCATATAAACAAGTGTCTTGCGAGGCAAAGCATCAATGTTCCAACCAGAGCTACGAGGATCATATAATCAAAAGCAGAGTCACCCAACCTTCAGCCATCTTGCTCCAGGGCTCTGGTGAACTTGTGTGCCTGGTCTCCACGTTCAGCCCTGAATCCATTAACATCACTTGGTTACTCGATGGCAAGGAACTGTGGGACTACAACACCAGTGAACCCCACAGAGGCCCAAACGGAAAGTTCAGCATCCAAAGCCACCTTCGTCTGTCCCAAGTCATCTGGTTACGTGGGGCAGTCCTCACCTGCAGGGTGACACATGCAAACACCACCCTATTCCTGAATAAATCGAAACCAGACATCTTGGAGGACTTTAATTTCTTAGATGACACCATGCATGCTGAAGTAAACCAAGACACAGATGTGGAAAGCTGGTATATGGCTTTCACTTTTCTCGCTTGTTTCCTCATCTCCATTATCTATGGTGTCTTGGCTACCATGATTAAGACTAAGTGATGATGATCAAAGGACAGATGCCATTTAATGATCCACATGTGGACTTTTGAGGATTGTTGATGGCAGATGGCCTTTCTAGTTTTAAAGTGTAATAAATTAATTTCTGCTacttctttcttttattatgtTATGAAACTGGTTTGTactatattcatttatttgaattGTCATATTGTTTCATGTTTATAGTGCGTGTGTGTAAGAGgaaacaagacaaaaataaataatataaatacataaatacattcaAATACCAATGTAATGTGATGTAACACATATTCTATCACAGGACTCATtcttgcatttaaaaaataaaaaattaaaatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207800 lncRNA upstream 39434 9950608 ~ 9953355 (+) True LOC120574664
XR_005641879.1 lncRNA upstream 41917 9947571 ~ 9950872 (+) False LOC120574664
XR_005641880.1 lncRNA upstream 41917 9948607 ~ 9950872 (+) False LOC120574664
TU207847 lncRNA upstream 57751 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA upstream 66304 9926138 ~ 9926485 (+) True G153424
TU208163 lncRNA downstream 142217 10169942 ~ 10235939 (+) True G153640
TU208227 lncRNA downstream 371400 10399125 ~ 10399353 (+) True G153684
TU208283 lncRNA downstream 574692 10602417 ~ 10602964 (+) True G153740
TU208291 lncRNA downstream 581866 10609591 ~ 10638479 (+) True G153746
TU208356 lncRNA downstream 681643 10709368 ~ 10709629 (+) True G153799
XM_039824673.1 mRNA upstream 53156 9938963 ~ 9939633 (+) True LOC120574415
XM_039824667.1 mRNA upstream 104822 9879302 ~ 9887967 (+) True LOC120574409
XM_039825618.1 mRNA upstream 950744 9036901 ~ 9042045 (+) True asphd1
XM_039823794.1 mRNA upstream 1023745 8959248 ~ 8969044 (+) False eps8l1a
XM_039824998.1 mRNA downstream 6837 10034562 ~ 10049463 (+) False LOC120574578
XM_039824999.1 mRNA downstream 7606 10035331 ~ 10049463 (+) False LOC120574578
XM_039825000.1 mRNA downstream 7739 10035464 ~ 10049463 (+) True LOC120574578
XM_039826307.1 mRNA downstream 27683 10055408 ~ 10056536 (+) True ier2a
XM_039825864.1 mRNA downstream 128715 10156440 ~ 10159160 (+) True alkbh7
unassigned_transcript_846 other upstream 18216 9973204 ~ 9974573 (+) True LOC120574581
unassigned_transcript_845 other upstream 54185 9938019 ~ 9938604 (+) True LOC120574658
unassigned_transcript_844 other upstream 56508 9935671 ~ 9936281 (+) True LOC120574414
unassigned_transcript_843 other upstream 58594 9931152 ~ 9934195 (+) True LOC120574413
unassigned_transcript_842 other upstream 71977 9920331 ~ 9920812 (+) True LOC120574623
TU207863 other downstream 37735 10065460 ~ 10066742 (+) True G153433
TU208172 other downstream 222652 10250377 ~ 10341623 (+) True G153646
TU208368 other downstream 724435 10752160 ~ 10752898 (+) True G153808
XR_005641865.1 other downstream 1036697 11064422 ~ 11073826 (+) False LOC120574482
TU209004 other downstream 2058136 12085861 ~ 12115192 (+) True G154254

Expression Profile