RNA id: unassigned_transcript_832


Basic Information

Item Value
RNA id unassigned_transcript_832
length 484
RNA type V_gene_segment
GC content 0.49
exon number 4
gene id LOC120574406
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9841276 ~ 9842959 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCAGTTACAACATAAACCATGTTCTCtggagctctgctgctgctgttggcagCTGGATgtgtgaagtgtgaacagtTGACCCAGCCAGCCTCTGTGACTGTGCAGCCAGGTCAACGTCTGACCATCACCTGTCAGGTCTCTTATTCTGTTGGTAGctactacacagcttggatcagacagcctgcagggaaaggactggagtggattgTAAGTGGAGCTGCTGGATACACAACATACTACAAAGATtcactgaagaacaagttcagtatcAGCTTGGACTCTTCCAGCAACACAGTGACTCTAAATGGACAGAATGTGCAGCCTGAAGACactgctgtgtattactgtgccagagtgttgatgTCAGTCCAGGGGAGATTCACCATCTCCAGAGATGACTCCAGCAGTAAACtctatctgcagatgaacagtctgaagaccgAGGACACAGCAGTGTATTACTGTGCCCGAGAGACACAGTGA

Function

GO: NA

KEGG:

id description
ko04662 B cell receptor signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207737 lncRNA upstream 126214 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 153447 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 163199 9654323 ~ 9678077 (+) True G153359
TU207740 lncRNA upstream 203307 9636829 ~ 9637969 (+) True G153341
TU207745 lncRNA upstream 298342 9542179 ~ 9542934 (+) True G153345
XR_005641881.1 lncRNA downstream 20026 9862985 ~ 9864890 (+) True LOC120574665
TU207833 lncRNA downstream 29362 9872321 ~ 9878863 (+) True G153415
TU207847 lncRNA downstream 78593 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 83179 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 104612 9947571 ~ 9950872 (+) False LOC120574664
XM_039825618.1 mRNA upstream 799231 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 872231 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 36343 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 96004 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 97564 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 97930 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 149830 9992789 ~ 10027725 (+) False LOC120574577
TU207813 other upstream 648 9800732 ~ 9840628 (+) True LOC120574632
unassigned_transcript_831 other upstream 654 9840078 ~ 9840622 (+) False LOC120574632
unassigned_transcript_830 other upstream 2621 9838206 ~ 9838655 (+) True LOC120574405
unassigned_transcript_829 other upstream 5137 9835562 ~ 9836139 (+) True LOC120574404
TU207831 other upstream 5206 9835556 ~ 9836070 (+) False LOC120574404
unassigned_transcript_833 other downstream 7306 9850265 ~ 9850879 (+) True LOC120574590
unassigned_transcript_834 other downstream 15838 9858797 ~ 9859499 (+) True LOC120574644
unassigned_transcript_835 other downstream 17096 9860055 ~ 9872662 (+) True LOC120574407
TU207835 other downstream 33862 9876821 ~ 9877328 (+) True LOC120574408
unassigned_transcript_836 other downstream 33929 9876888 ~ 9877451 (+) False LOC120574408

Expression Profile