RNA id: unassigned_transcript_833


Basic Information

Item Value
RNA id unassigned_transcript_833
length 507
RNA type V_gene_segment
GC content 0.46
exon number 2
gene id LOC120574590
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9850265 ~ 9850879 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgatggactataggacaggactgctgctgtTAACTatctgctgggcagGTGTTTGCAGTCAGACTCTGACTGAGTCTCAACCAGTGGTAAAGCGCCCTGGAGAATCCCACAAACTGACCTGTACATATGCAGGAATATCAGATAATAGCGCTGATATCGCTTGGATCAGACAAGCTGAaggaaaaggactggagtgggttGCCTTTATTTCTGCTCCAAGTGGAAGCACTAAAGCTTATTCAACGTCAGTCCAGAATCGCTTCACCATATCCAGAGACAACAACGTGGACCAggtgtatctgcagatgaacagcctGACGACTGAAGactctgctgtttattattgtgctcgaaGGCCACAGTGATACAGGAAGCCACAGAGCTGTACACAAACCACTGCAGATGTCACTGTGACAGTCACTGATAGAAAGTGCAAGTTTAAATACCCCATCATTGACAGTATTTGATGCATTTCCCCACACTATGCTTTTATCACAACTTGCcct

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207737 lncRNA upstream 135203 9673498 ~ 9715062 (+) False G153340
TU207736 lncRNA upstream 162436 9658348 ~ 9687829 (+) True G153340
TU207761 lncRNA upstream 172188 9654323 ~ 9678077 (+) True G153359
TU207740 lncRNA upstream 212296 9636829 ~ 9637969 (+) True G153341
TU207745 lncRNA upstream 307331 9542179 ~ 9542934 (+) True G153345
XR_005641881.1 lncRNA downstream 12106 9862985 ~ 9864890 (+) True LOC120574665
TU207833 lncRNA downstream 21442 9872321 ~ 9878863 (+) True G153415
TU207847 lncRNA downstream 70673 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA downstream 75259 9926138 ~ 9926485 (+) True G153424
XR_005641879.1 lncRNA downstream 96692 9947571 ~ 9950872 (+) False LOC120574664
XM_039825618.1 mRNA upstream 808220 9036901 ~ 9042045 (+) True asphd1
XM_039823792.1 mRNA upstream 881220 8959248 ~ 8969045 (+) False eps8l1a
XM_039824667.1 mRNA downstream 28423 9879302 ~ 9887967 (+) True LOC120574409
XM_039824673.1 mRNA downstream 88084 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 89644 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 90010 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 141910 9992789 ~ 10027725 (+) False LOC120574577
unassigned_transcript_832 other upstream 7306 9841276 ~ 9842959 (+) True LOC120574406
TU207813 other upstream 9637 9800732 ~ 9840628 (+) True LOC120574632
unassigned_transcript_831 other upstream 9643 9840078 ~ 9840622 (+) False LOC120574632
unassigned_transcript_830 other upstream 11610 9838206 ~ 9838655 (+) True LOC120574405
unassigned_transcript_829 other upstream 14126 9835562 ~ 9836139 (+) True LOC120574404
unassigned_transcript_834 other downstream 7918 9858797 ~ 9859499 (+) True LOC120574644
unassigned_transcript_835 other downstream 9176 9860055 ~ 9872662 (+) True LOC120574407
TU207835 other downstream 25942 9876821 ~ 9877328 (+) True LOC120574408
unassigned_transcript_836 other downstream 26009 9876888 ~ 9877451 (+) False LOC120574408
unassigned_transcript_837 other downstream 27453 9878332 ~ 9878785 (+) True LOC120574612

Expression Profile