RNA id: unassigned_transcript_844


Basic Information

Item Value
RNA id unassigned_transcript_844
length 521
RNA type V_gene_segment
GC content 0.42
exon number 2
gene id LOC120574414
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9935671 ~ 9936281 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATTTATGACAGAACAACTGGGACACTTTAGAAAACTTAGAAATATTCAGATCAGAAAACACTGGATTACAGTTTTTATTACAGAATGGAAAATATGATTTCATTGAGTTTATTCTTTATAGTTACTTTTCATGGAGTTTGGAGTGAGATCAAACTGGACCAGTCTCCCTCTGAGGTGAAAAGACCTGGAGAGACAGTGAAGATGTCATGTATCATATCTGGTTATAGCATGACAAGCAATGATATTCACTGGATACGACAGAGACCAGGAGAAGCTCTGGAGTGGATTGGGTGGATGAGCACAGGTTCAAACTCTGCTAGCTATGGCAGCTCCTTTCAAAGCCGTTTCATCATGACTGAAGATGTTCCCAGCAGCACTCAGTACCTCGAGGTCCAGagcctgacagcagcagattctgctgtttacttCTGTGCTCGAGAAGACACAGTGACTGAAGACAGTGGAGCAGCTGCACAAAAACCTCCACAGACAACAAACAGCAATTTGATCTTACTGTAA

Function

GO:

id name namespace
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207847 lncRNA upstream 633 9921552 ~ 9935038 (+) True G153423
TU207848 lncRNA upstream 9186 9926138 ~ 9926485 (+) True G153424
TU207833 lncRNA upstream 56808 9872321 ~ 9878863 (+) True G153415
XR_005641881.1 lncRNA upstream 70781 9862985 ~ 9864890 (+) True LOC120574665
TU207737 lncRNA upstream 220609 9673498 ~ 9715062 (+) False G153340
XR_005641879.1 lncRNA downstream 11290 9947571 ~ 9950872 (+) False LOC120574664
XR_005641880.1 lncRNA downstream 12326 9948607 ~ 9950872 (+) False LOC120574664
TU207800 lncRNA downstream 14327 9950608 ~ 9953355 (+) True LOC120574664
TU208163 lncRNA downstream 233661 10169942 ~ 10235939 (+) True G153640
TU208227 lncRNA downstream 462844 10399125 ~ 10399353 (+) True G153684
XM_039824667.1 mRNA upstream 47704 9879302 ~ 9887967 (+) True LOC120574409
XM_039825618.1 mRNA upstream 893626 9036901 ~ 9042045 (+) True asphd1
XM_039823791.1 mRNA upstream 966627 8959248 ~ 8969044 (+) True eps8l1a
XM_039824673.1 mRNA downstream 2682 9938963 ~ 9939633 (+) True LOC120574415
XM_039824991.1 mRNA downstream 4242 9940523 ~ 10027725 (+) False LOC120574577
XM_039824992.1 mRNA downstream 4608 9940889 ~ 10027725 (+) False LOC120574577
XM_039824993.1 mRNA downstream 56508 9992789 ~ 10027725 (+) False LOC120574577
XM_039824995.1 mRNA downstream 75066 10011347 ~ 10027725 (+) False LOC120574577
unassigned_transcript_843 other upstream 1476 9931152 ~ 9934195 (+) True LOC120574413
unassigned_transcript_842 other upstream 14859 9920331 ~ 9920812 (+) True LOC120574623
unassigned_transcript_841 other upstream 15520 9908580 ~ 9920151 (+) True LOC120574412
TU207815 other upstream 15667 9919535 ~ 9920004 (+) True G153398
TU207841 other upstream 24405 9905994 ~ 9911266 (+) True LOC120574588
unassigned_transcript_845 other downstream 1738 9938019 ~ 9938604 (+) True LOC120574658
unassigned_transcript_846 other downstream 36923 9973204 ~ 9974573 (+) True LOC120574581
TU207863 other downstream 129179 10065460 ~ 10066742 (+) True G153433
TU208172 other downstream 314096 10250377 ~ 10341623 (+) True G153646
TU208368 other downstream 815879 10752160 ~ 10752898 (+) True G153808

Expression Profile