RNA id: TU228870


Basic Information

Item Value
RNA id TU228870
length 2245
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G168774
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 25880884 ~ 25915379 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTGATTGGTCGACACACTCAGCCCACTGAATTCAAGAAGTGAAAATGGCCGGTCTTAACTGCAAATTGATACCTCTCCATACAAAAATAGGACTCAATAACCGTTCAGTTGTGGATGTATCAATCTGGAGTTATTGAGCAAAGTCTGTGCAACGATACTGAAGTTCCAGGCTAGGTTACAAAGCTTCTGGAAGACCTAGAATCGCTCTTTGAAAGGCCCAGAGAAGCCCTTTTTGAAAGGCCCAGAGAAGCCCTCTTTGAAAGGCCCAGAGGTTAGCCTTCAGGCTAAACAAACAGAACCATGCTATCTTAAAGCGATGCCGAGATATCGGAGATTACATAATTTAGGTGATTTATGGATTCATCATCATGGATTTATTGTGACATTACAGAAACTGCAGTTGCAGGCTGGATGAAGAAACTTCTAAAACAGACTTGCGATCGCATGGAAGACCTCATTGACAGGCGCATTTATCttctaataaaaaaaGGCCGGCGTCATGGCGAATAGAAATGATGGCTGGGGATCCAGGGATGATGAAGGCTTCCGGAGGAATCTCTCCGGGCTTCAGGGGCTGAGGAGGGCAATAGCCCTGTCCAGCGGCGCCATATCTGAAGTGCCAGCTGTTGCTGTCGACTCCAGCGCCCACTGGGGGTGAGAGTTCACCACCATCTCCATCTACACAGCAAACTGGCACAGAGATACTGGGAACTGGTACAGCTTGGATCTCGAACAATTTCCCAGCTCTCTTTTCCACCGAGGGAAAAGCTGACAGACAGCAAGACATACTGTCACTGACTCGCCGATTGATTGACTGTGATGCGACTCCTCACCCTCAAGACCTCTACCTATGTTCTAATTCCTGCAGCTAGACAGAAAATCAATGCATGGAAGCTTggctggagggaggagggaacaGCTCACAATGTTCCATATGCTGCTTCGAAAGTCAAAGTTTCAAAAGTTTTCAAGTCAACTGACAAAAGCTGTTAGACATCAGCCCTGAGCCAGTGTTTCTGTGAAGCACAGGTCATTTTCGAGGCCAGTTCTACTTACAATGATGTTGTGTTGCTAAAATTCTTAATGTCGACTCCCACTCAGGACAACTCATTTcttattaaaaaacatttgcCTTTTTCAGTCTGTGGATCTCCATTCAGCCAGCTGCTTTTATGGAAGGATGCAGTTGCTTATCTGTGGCTCTGCATAAGGGCCCAAGGCTTTTGGCACCTCGGCTAAGCTCTGTATGCACATCACACTGGAATTTAAGATAATTGTAGATATTCAAAGCACAAATCTGTCAAATCCCCTGTTTTACCATGTTGTCTGAaccaaagtaaaaacaaaaatgaattcaatgtattaaatataatttaatccATTGGACAAATTTGAATGTGTAATTGTAATGGGCATTTAGTTGTGGAGGAGAAGTGATACTTGAATTAAACTAAAATGAGTGATTGTTAAGCCACTCATGTGGCTTGCCCTATGGGACTCACATCTGTAAATATTGCCCTAGATATCGgcaattaaaggaatagttcagcaTTTTGGCAAATGCGCTTATTCACTTTGTTGCAATGATATTGAGATGAATGATACCACTTTTATGTCTGCACGATAAAAACAGTATAGAGCCATGAGACGGTTAGCTTAGCAAAACGTAGGGGGAATAAGCTAGCATGGCTCTGTTCAatggtaaaaacaaacaaacattggcTAGTACCTACTAGCACCTCTACAGCTCACTAAATAACACTATATTTTGTTTCTTTAATCCGTACATTGTAACCTTTAGACTGCAACTTCCTATTTTTACACTTTGGATTTGGTatagattaaacaaatgagatataacGTGCtgaggctagctgttttcccctaCTTCCAGTctatatgctaagctaagcttacTGTCTCTAGCATAATCTCTAGCATACAGGCATGAGAGTTGAATCATTCTCTCATCTAGCCCTCAGCAAGAAAACGAacaagcgtatttcccaaaaagtTGAACCAGTTAACCATTCCAGTTAACTCTGTTAACTATTCCTTAGTTAATCAGacaaattgtttaaaatgtaaagcAAGTTATAAAACAAGAGCATAGAGTTTGAGTGACCTATATCGGGATGTTAGATGCTGGGATGTCCAATGAGAAGTGTGCGCCTgtgtaaaatgaataaatgcagaaaatactGTACTCAGGGTCTTTTGATTGAATAAAGGATCTTATTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228876 lncRNA downstream 36542 25841925 ~ 25844342 (-) True G168779
TU228874 lncRNA downstream 42025 25838653 ~ 25838859 (-) True G168778
TU228872 lncRNA downstream 62391 25818279 ~ 25818493 (-) True G168776
TU228871 lncRNA downstream 78742 25801790 ~ 25802142 (-) True G168775
TU228836 lncRNA downstream 202659 25677877 ~ 25678225 (-) True G168754
TU228901 lncRNA upstream 56962 25972341 ~ 25976457 (-) True G168800
TU228962 lncRNA upstream 286248 26201627 ~ 26203804 (-) True G168856
TU228946 lncRNA upstream 309482 26224861 ~ 26236172 (-) False vamp2
TU228982 lncRNA upstream 367475 26282854 ~ 26283182 (-) True G168876
TU229032 lncRNA upstream 614328 26529707 ~ 26532499 (-) True G168907
XM_039778019.1 mRNA downstream 157666 25623735 ~ 25723218 (-) False pcdh1a
XM_039778021.1 mRNA downstream 160056 25637912 ~ 25720828 (-) False pcdh1a
XM_039778016.1 mRNA downstream 160058 25623735 ~ 25720826 (-) False pcdh1a
XM_039778015.1 mRNA downstream 160059 25623735 ~ 25720825 (-) True pcdh1a
XM_039778020.1 mRNA downstream 160061 25623735 ~ 25720823 (-) False pcdh1a
XM_039777540.1 mRNA upstream 63848 25979227 ~ 25983358 (-) True LOC120544034
XM_039776745.1 mRNA upstream 69934 25985313 ~ 25998490 (-) True LOC120543604
XM_039777227.1 mRNA upstream 87346 26002725 ~ 26052219 (-) True fgf11b
XM_039777829.1 mRNA upstream 246486 26161865 ~ 26163707 (-) True LOC120544213
XM_039777562.1 mRNA upstream 298735 26214114 ~ 26220720 (-) True pcolcea
XR_005636486.1 other downstream 976033 24655803 ~ 24904851 (-) True LOC120544362
XR_005636485.1 other downstream 976034 24655803 ~ 24904850 (-) False LOC120544362
TU228619 other downstream 976077 24764999 ~ 24904807 (-) False LOC120544362
TU228489 other downstream 1384302 24492586 ~ 24496582 (-) False LOC120543987
TU228215 other downstream 1904563 23974554 ~ 23976321 (-) True LOC120544713
TU229028 other upstream 659596 26574975 ~ 26579260 (-) False ammecr1
TU229104 other upstream 766135 26681514 ~ 26684956 (-) True G168964
TU229110 other upstream 773500 26688879 ~ 26692230 (-) False gng3
TU229438 other upstream 1600513 27515892 ~ 27518984 (-) False emc6
XR_005636444.1 other upstream 1804426 27719805 ~ 27730148 (-) False gusb

Expression Profile