RNA id: TU229804


Basic Information

Item Value
RNA id TU229804
length 2164
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G169447
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28396980 ~ 28399180 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGAATGAATTTAAATTAGGTTATTCGAAGTTtcgaataataataatttgaataATGAAGGATTGTGCAATGTTAAACTAACTAGTTTGCCTTCCGGCCGTTTTAAAGGTCCAACTAGTAATACATGTTTGTAGAGTAGTGTGCTAGGTGAGCTAGTTAGTTAGCATTCTAACCCTGTGAGGTCACAAATGTCGGTgatgaatgaaaaagaaaaactgtgttCATCGGTGATTTGAGCTCTTTGTTTGCCATTCAAAGTGGTTAGCTAGCTCTGTGACGCCGACTCAAATCATTGAGAGCACGTGTGGCTCCGCAGCAGCTCAGCCTCAGGTGAATGTTTATAGAACTccattttgatttcattttgtACCTCCTCTTTCGCTGGCCTGGGTCGTCACCCTGCGATAGAAAGCGTGTTTGGCTGAAACAGTGCTCTGATCACTTGAACGGCAGTGAAAAGGAGAATCTCAGCGTCATGATTAGGCCCAGGCTGCCACCGTCAAGACTTGGGCACTGTccccaacagaccccgttgctctggacggagaccagtgaagtctattagaagcacttttccggtgatggccagctttaccgcgccgcctccaactgagagagacaacgtaaatgtgacgtgaacaacctgtctgaaagttggaagtcttctggtagctgtgccaagagaaatctcaatcattcccaatcttacagagacggagagcgtaggtatatgtaaggagatagcATGGGCACAAGCTAATTATTGctcactaaaatgctagttaacattagtaattaaacctaaacagctcatgtgagttgaaactgcctgcaagcttctcctgtactatacggtaattcctctactatgtgacacaatcgttagcctatttttacaaaagcttttgctacggagccataacgtgaggtacagggtaatggagccttttatacattgtcgtgtttctttacaactaaacaatggacaaatagagtctttaaacgcttcagatgtaaagttattcgctgtcaagtgacaccaaaatgaatgctagtcagtggaatgctaacgggaggtgatggccaggtagcaacaaaatggcgccataggaggttcgagttctgaagcttacccccttgcttaGAAACGGGGAGTGCAGCGCTTTGCAGTTCCTCTGTTAATCTTGGCCTCAGTATCCTTCAGTGAATCCGAATGGGAAAGCATTTCACCTACCGTGTTTAGGGATTGATGTTCACACAGGCAGGGACGTTTATGCATAAAACCCAGAGATTATCGTGGGTGCTGGGGATTGTAAAGCTTTATACTGCATCTTTATTTAATTGTTCAGTAAAAGAGTTGGTAATGTTGTACAGGATAAATGAATATCTTAATGTGAAGTTGTCTAAAATGTTGTATACGCAGTTTGAAATCTAGCAAAATTCATTtaataatgtttttcttttgcgTTTGTTCCTTCTCCCTGCTGAGGATGATGTGAAGTGAAAGGCTGTTTGAACCACAAACATTTGTGATGGGATGTTCTAACTTAACAGACCCAAACGGaatctgcagattttttttttatttaggtttttacagttttcagcggTGATACAGGATGAAAATTTAGCGTTTTTTCatttaattttgacatcATTTGAcatctgtaaaaaacaaaaaaatgaaaatctgcagaaaatTCGCCCAAAATTCCCTCTTGTCCTGCTTATTAGCTTAAAATGGTTGACCTCTCATCACATTCTAATGAGAATGTTGCCAGCTTtacaagtgtgtgtttgtacggACATTTGTCAGTCATGTTGTCGTCTTTATCGTTGGTGCATTATTGGCATTCCCCTGCTGTCAGAGGAGGccgctcatttttttttttcatctattattattattattattattattattattattattaaaatactGCTTGTATTTAAATATTTGCACTTTTCCACTTACAGATGCATATTAAAGTTCTTGAGAATACATATAACACTACTGGTACCTGCCAGCCGTTTAACATTGTACAGTTAAtgatcaagaaaaaaaaaaaaacctgtggtCCATCTGTAAACGACCGTGCTtactgtgtatctgtctgttgtGTCAGTCTCCTGTGCTTTTGATGCCAATCTGCATGTCACCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229767 lncRNA downstream 39603 28357011 ~ 28357377 (-) True G169417
TU229750 lncRNA downstream 66009 28330652 ~ 28330971 (-) True G169402
TU229747 lncRNA downstream 162031 28234590 ~ 28234949 (-) True G169399
TU229726 lncRNA downstream 193227 28163135 ~ 28203753 (-) True G169387
TU229716 lncRNA downstream 342971 28047607 ~ 28054009 (-) False LOC120544668
TU229900 lncRNA upstream 300641 28699821 ~ 28704621 (-) True G169524
TU229929 lncRNA upstream 354095 28753275 ~ 28755551 (-) True G169550
TU229931 lncRNA upstream 358363 28757543 ~ 28761645 (-) True G169551
TU229934 lncRNA upstream 358602 28757782 ~ 28761645 (-) False G169551
TU229930 lncRNA upstream 358954 28758134 ~ 28761645 (-) False G169551
XM_039777646.1 mRNA downstream 29519 28358777 ~ 28367461 (-) True dhx33
XM_039777647.1 mRNA downstream 29813 28358777 ~ 28367167 (-) False dhx33
XM_039777648.1 mRNA downstream 40425 28348616 ~ 28356555 (-) True LOC120544092
XM_039826549.1 mRNA downstream 49494 28314169 ~ 28347486 (-) False LOC120575713
XM_039826547.1 mRNA downstream 49494 28314169 ~ 28347486 (-) True LOC120575713
XM_039778141.1 mRNA upstream 187 28399367 ~ 28470511 (-) False camkk1a
XM_039778140.1 mRNA upstream 187 28399367 ~ 28470511 (-) True camkk1a
XM_039777281.1 mRNA upstream 76733 28475913 ~ 28539128 (-) True atp2a3
XM_039826521.1 mRNA upstream 195244 28594424 ~ 28632819 (-) True zzef1
XM_039826523.1 mRNA upstream 236533 28635713 ~ 28653484 (-) True ankfy1
XR_005642041.1 other downstream 49490 28314437 ~ 28347490 (-) False LOC120575713
TU229743 other downstream 173730 28217243 ~ 28223250 (-) True srrm3
XR_005636427.1 other downstream 369203 27930539 ~ 28027777 (-) False LOC120544024
XR_005636444.1 other downstream 666832 27719805 ~ 27730148 (-) False gusb
TU229438 other downstream 877996 27515892 ~ 27518984 (-) False emc6
TU229887 other upstream 255977 28655157 ~ 28664051 (-) False ube2g1a
TU229954 other upstream 405205 28804385 ~ 28808430 (-) False atp5l
TU230221 other upstream 1363269 29762449 ~ 29796427 (-) True LOC120544028
XR_005636389.1 other upstream 1483626 29882806 ~ 29901937 (-) False LOC120543707
TU230376 other upstream 1546488 29945668 ~ 29948932 (-) False map6a

Expression Profile