RNA id: XM_039777363.1


Basic Information

Item Value
RNA id XM_039777363.1
length 5482
RNA type mRNA
GC content 0.42
exon number 6
gene id scn4bb
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 24073627 ~ 24086034 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGCCAACGGAGAGGACAGGGAAAAGTTGTGAGGTAGCCGGAGGGACGGGCAGGGAGAAGTGTCAGCGTCATTGGTGCTCTGCTGAGAAGGAATGAGAGCAGCGGCTTTTCCTCCTGTCCGTCAGTCTCTCTgcgtttctgtctgtctttctgattgtctccccctctcctctctaaTTGTCTCTCATCCTGGCTGGCGCTGCAACGTTGCCGGCTCTGCAGTGAAAGTGCTGGCTGGTGGATTCTCCTTGAGTGAACCCTGACTGTGCGCAGTGTTTGCCACTCCGTTACTGTCCTGTCCACACTGACTCAGCTGTGCAGGCAGCCTGCTGGCGTCTGAGTGAACACCGGCTGCACGAGCAGGAGTGCTGTGAGGGTTGGCGAGCAGGCTTCGTACCCCCGGGACTAGTGAAGGAGCACGAGTGGGTCGTGCCTCGTTTGGGGTCCAGACACCCAGACAGCACCTTCCAGATTTAATCCAGTAAACCCCAGAGGCCAAGTTGTACTAAAGGATATTATACGAGCTATCTGGAGCCTGCTGGATCCTGCAGCAGTATTTGTTTTGGAGCAGATCTGGCTGCCATGGAGGTCCAGTGGGTTGGGGTTGAATTCCCGAGGCTGGGCCCTCCACACACAGCCGTCGGCCTGATCTTCTCTATGTTGCTTGgcCTGTGGTCTGTTCAGGCCCTTGAAATGTCTGTAGGGAAGATTCCCTTCCTCCAAGCAGTGAATGGCAGCACGGTCATGTTGCCTTGTACATACGCCAGCTGTATCGGCATCGAGGACCTCTACTTCAACTGGCAATTCAATGACAATGGCACCATGCAGAAGGTGTGTGATTCAGTGATAGCGTCAGAGACGGCGGTGCCACATGTGAATATATATCGAGAGCGGGTGGAGTTTGTGGGGAAGAATCATAACAACAACGTCTCCATCTTGCTGTGGAACATCACCTTCGAGGACGGAGGCCAGTACACTTGTTTTGGACGCAACCCCAAAGAAAAGGGCAGAAACCACAGTACCATCTTCACCCTCATTGTGGTGGACGAGTTGAGGGTGGTGGACAACACGCTGACCATCCTGATCGCCTCAGCTGTGGGCGGAGGCATCGCAGCATTAATGGGCTTCATGTTGCTCAAGAACTTCACTCTCTATGTTCTTGCCAGGCTTGAAGAGAAAAATAAGGAGTGCCTTGTAACTTCATCAGGGATCGACAACACAGAAAATGGCCTCTCAGGATCTAAAGCGGATTCAAAACCAACACcaaaaaagaaatgagaaagTGCACGTATATAAAACAATATGAGTACTCATATTTATGTACCTTCTTTGCATATATTTGTATATGCACgtgtttgcacacacacacacaagcaaattCATTATGTTCAAGTTGGGATCCTAAAAACGGCCTGGCTGTGACCTTCAAAAGGGAATATATACATGTGCACGGAATACTAATGTGCAGATGATATTCAACTAAGGAATATGCAAATCAGTGCACAcataattatttaaaatgtgcttATAGTTTAATAATTTACATCTAAAGGATAATTGCACCTACCAGAGACACTTTCACTTGATTTATTTAGTCTTAATCTTATAATATTTACATCCTACCTCCCATCTGCTATCCCATACATCTTCCTCCTTTGCCCACATtggtaacacaaaaaaaagcattaaaaggtgttatctttttttggggggtgtgGCCAGTAACTGGGTCTGAAATCAGTTAAACATTTGTCATGTAAAGCTAGTGTGTGCTTTTGCTTAATGAAATGTGTCCTGATGCCACACAGAGCAGGAATATcaagtccaaaaaaaaaaaaagtccaggtTTCTATGGACAACATTGTTCTCAAATTGTCTCTGGTTAGACTGTGGGATTGACAATGCATTATAGATAGTGGAAGTAAGCACCCTGCTCTGTCAACAGCAGTGAAGGAAACGTAACATTAAAGGTAGTTTTACAACAGGAAGGAAGAAAACATGACGCAGTCTGGAACCCTTTCAACTGATCGATTCCTCACGGTTTCAGCAGGCTCTGTATAATATAAAGGTGCAATTTGGATAAGATTTGTTGATTTATTGGTGGATATTTTGTCAATGTAATGATTCACACTAGTAGTCATCATCTGATACATCTGCACCAAGCAAGTAAACAAACTGAATGTTAAGAAGAAAGACCCCATTTAAAATGATATGTGGCCATGTGTGTTTACAGGTATTATGCAGTGAGTGGAAGCTAAGTGGAAGCATGCTTGTGAAGGAGCAGTAAGCTAAGTGTCTCTGGTAGATGGTTTCTTTTTGAACTCATTACATTAAAACCAAAATTATGtgcacattttattaaattatggggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtcacAAAAAACAGTTTATCAATTTGCACTGTCATGCTCTGTTTAAAGTGCTGGGTAGCCATGATATATCAGTAATTATTTGTGGCCACAGCcagaatacataaaaaaaaaaaaaagtaaactttgACTGTTTTTCATCCGAagtcaaaacaaaaactttttgGTTTACGTGCTTGAGACAggaaataatgtaatgtagttagAGGTGGGCTGAATCCTAACACCAAATTCACAGTATATCTTCGATAATCTGGTCTAACTACATCAAAATCAAATGTTCTATCTCACTTATCTACTGATCAATTTGTGGCTGCTTTCCACAAAACTCCTTCTGATGTATTCAAACAACTGTAGTAAAAGAATGGGTGCTTTAATTAGTGCTAACTCAAATGGTACTGACAGAATATTGTAGGATTCAGCCCAGCTCTTCATCTTGTACCTTCTCTTTGCTTGATATAAAACACAGGTGCCTGTTAGTGCTTATGCTCCTCTGCCACCGAGGACAACTACATATTGCAAAACAGTTTATAAAGCTCAGCAACCGTAATAATACAACAAGCTTCTAAACTGACTTGATAGACAATCCCCTTAAacaccccccgcccccccacccccacccactccctagaaaatgaatgaatgacccTCTGATGTTGCTGCTTTTAAAACAATAACCAATGCATTTTAAGCATGTGCAACATGGGCCAGATTTTAGACACAATGCTTGAAAACAGAAATACATactttttggagaaaaaaaacatgttccaATATACTAACATTGGTAGTCAGCTCTGAGGTTAGCTGTAAATCCCATTTTATGCCATGCTAATTTCATTGTGCTAACCCTTGCTTAGACTAAGCACTATTTGGTGATGTGGCCCTGGATACTGTATGCCTGGATCAGACTCAACATATTTGCTTAGTATGTGACTCTTTGTGGAAATGGCTTGTTTTTCCTAAACACTGACAAACATCAATTCAGTCAGTGTTTTACTATTTGCAATAAATCATCTTTACCAGCTGCACtgcagtgaaaaagaaaaacctgGTTGTCCTACCCATGCATACAGTAAATGACCCATAAATGCATACTCTAAATGATCATGGGATCAAGTTTCAGACATGCTGAGTATGGGGGCTGTAGTTCAAGTATCTTTTCAAGCAGGAGATAAAGTGAGGCTGTCAGTGTAGCCCACTGACTGCCAAACAGGGATGATTCCTATTGAGCATCATATCCGGACATGAATGTATCTGCATCACACTCAAAACAACTGCATTTACAATTTACTTCTGTTGCACATTCAAGACAATGAATGTCtggctttaaaaagaaatacctCTGGAGAGTGGGACAGATGTGGGTAAGCACTGAGTCAGGTCGGATATAAACGTACCTCCCCAGTCGCAGCAGGTGTTAGCTGAGCGTACTGTACAGTGAAGTGTGAGTTTCTGGTGGTTTCTGAAGCTcactgtaataataatgtgcCTCCACATTAAAGTGACTCCAGTCTTTAGTCACTGGCTTGAAGCAATATTATGAAGGGGAtgtgttgttgttaaaaaacatatttttgtgtaTGCACAATGCAAATCAGTGTCGGTTTTTCACATTGATCATCCAAGTGAGAAGAGAAACCAAACAGCACACATGAGAAAATATTCAGGGTGCTAAATTTCTTTGAGGTTCCATGAAATTATGTAAGTTACTCAATGTGATGTATGTCCTATTGGAACAGCATTAGATGGAGAGGGATCAATCTTAAAGCAATAGTTTTGACATTTTCGGAAAGTATGCCTTGTGGCTTCTTGCCGAGAGTTTGACAGATACTTTCGTGTCTGTCTGGTCAATATAAAGCTACATCGACCagctgcttagcttagcatagcataatGACTGGAAATGGGGAAGCAGCTCACCTGGCTCTTTCCAAAGGAAACAAAATCTGCCTAGCAACACCTCTATAGCTCACTAATTAAAGTATCTCGTTTGTTTAATCTGAAGTATAAAAATGACTAATTGTAGTTTAACGGAAGGGATGGACAGTTTTCTGGCTTCCTGTGTTCTcatggttgcctggcaactgcaCAATGTCTTTTTGCTAAGCTAATCTAACCATCATGCTAACCAAAacgtcaaactattcctttaagtatATAAACCAATGGGTTATTGGTTATGAAAAAAGATATTTGATAAGACTGACAGAAAGgcaaaaagctgcttgctgaCAAAGCTGTGGTGACTTCATCATCCCCTTTCGTGGGATCTTAGCGAAAGATATTGCAGGTACACAAGATGCAAGAAATATTATGGGTATATTCATATGTGTGTTTACCATATTCTATTTTGACTTAAAAGAGAAGATCCCCCCTGGTGCAGGACTATGAATTGTCAAGAAATCAGGTCTTAACATTTGGGCTGTTGCTGTGACTTTGGAAACATGAAGGCAGCGTTTTGCAGGATCGACCATCAAACAATAGAATAGCAATAATTTGATTTAACTGTTGAAGAGTGGGTTTTCTCTGAGTGTCTAATCTCTGTCAGCTGTTGTCTAATTAGACTTGGTTTTTGATATGAAAAGGGATTGCCTTCTCAATgaatcaattaattgagaaaacatATCTTTTGGGTAATGTTGAGATTGCGTCAGTGAGGGCCTTATGATGACAAGCAACTCTAtgcaaatcataacagaagtgaCCATTTCTGTGAGCAATACAAGAGTAGAAGATCAGGGAGTTGTGGTGATGGGATGCAGGGTGAATGGGGAACACCCAGAGAGAAGCTTGGAGTGGACTGGAGCCCCTGTACTTGATCAGATCCTGCAGAGCATATAGACTCACCAAGTCACGCTCCACCGCTACTCTCTGCACACacatatagcctactgtacagCTTTAATGCTCTGGCTCGCCCTCAAATGATGTCTCCATTTTCAACCTCTCATCCGTGCATATCAGCTCTTAATGTCTTTATTATAGAAACAAGAAATCTAATAAAGTTTTGAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU228084 lncRNA downstream 309488 23763547 ~ 23764139 (-) True G168238
TU227962 lncRNA downstream 467322 23605559 ~ 23606305 (-) True G168161
TU227913 lncRNA downstream 618561 23450693 ~ 23455066 (-) False mink1
TU228248 lncRNA upstream 19548 24105582 ~ 24108489 (-) True G168351
TU228274 lncRNA upstream 87792 24173826 ~ 24174101 (-) True G168365
TU228357 lncRNA upstream 240397 24326431 ~ 24327158 (-) True G168431
TU228390 lncRNA upstream 243475 24329509 ~ 24330155 (-) True G168452
TU228443 lncRNA upstream 309742 24395776 ~ 24398400 (-) False radx
XM_039777359.1 mRNA downstream 2537 24015294 ~ 24071090 (-) True LOC120543934
XM_039777360.1 mRNA downstream 2620 24015294 ~ 24071007 (-) False LOC120543934
XM_039777361.1 mRNA downstream 2620 24036435 ~ 24071007 (-) False LOC120543934
XM_039778006.1 mRNA downstream 76769 23985652 ~ 23996858 (-) True LOC120544352
XM_039778665.1 mRNA downstream 97332 23974847 ~ 23976295 (-) False LOC120544713
XM_039778200.1 mRNA upstream 4241 24090275 ~ 24097972 (-) True LOC120544451
XM_039778201.1 mRNA upstream 4241 24090275 ~ 24097967 (-) False LOC120544451
XM_039778199.1 mRNA upstream 6270 24092304 ~ 24097983 (-) False LOC120544451
XM_039778197.1 mRNA upstream 6270 24092304 ~ 24097976 (-) False LOC120544451
XM_039778202.1 mRNA upstream 6306 24092340 ~ 24097971 (-) False LOC120544451
TU228215 other downstream 97306 23974554 ~ 23976321 (-) True LOC120544713
XR_005636406.1 other downstream 124767 23922633 ~ 23948860 (-) False thoc2
TU228135 other downstream 147812 23921260 ~ 23925815 (-) False thoc2
TU228137 other downstream 147812 23921260 ~ 23925815 (-) False thoc2
TU228118 other downstream 261864 23803551 ~ 23811763 (-) False nlgn3b
TU228489 other upstream 406552 24492586 ~ 24496582 (-) False LOC120543987
XR_005636486.1 other upstream 569769 24655803 ~ 24904851 (-) True LOC120544362
XR_005636485.1 other upstream 569769 24655803 ~ 24904850 (-) False LOC120544362
TU228619 other upstream 678965 24764999 ~ 24904807 (-) False LOC120544362
TU229028 other upstream 2488941 26574975 ~ 26579260 (-) False ammecr1

Expression Profile