RNA id: XM_039777630.1


Basic Information

Item Value
RNA id XM_039777630.1
length 2704
RNA type mRNA
GC content 0.46
exon number 12
gene id gusb
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27718999 ~ 27746458 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagaaaaaaaaagaaaaccgcgGGGAGAAGGTTTGTTCAGGCAGATAATGAATATTTGGTACAAGATGGTCATACCTGCAAGGCTCGGTGCGTTTCGTGTTTTGTGCCTCTTTGCTGTGTTTGAAGCGGTATGTCTGCTGGACACCGGCATGCTCTTCCCCCGGGAGTCTTCCTCCAGAGAGGTGAAGGAGCTGAACGGGCGGTGGGACTTCAGGGCTGACAAGTCCCCAAACAGGAACCAGGGCTTCGAGAAGGCTTGGTACAAAAGTCGCCTGGCAGAGGCCCAGTGATTGACATGCCAGTTCCTGCCAGCTACAATGACATCACCCAGGACGCCACGCTGAGAGATTTCATTGGCTGGGTGTGGTATGAGCGAGAGGTGGTGGTGCCTGCCCGCTGGATCGCCGATGAAGGAACAAGAGTGGTTCTCAGAGTGGGAAGTGCTCACTATTATTCAGTAGTGTGGATGAATGGGGTGAAAGTGACAGAGCATAACGGTGGCCATCTTCCTTTTGAGGCTGAGATAGGCAGTTTAATCCGCAAGGACCCAACTCAGCCATGTAGGATCACCATCGCTGTCAACAACACTCTGACTCTGGACACTCTTCCTCCAGGAAATATCCAGCACATGGACGACCGCACACAGTATCCTGATGGTTATTTTGTGCAAAACACCTACTTTGATTTCTTCAACTATGCTGGCATACATCGTTCTGTGTTGCTGTATACTACTCCTAAGGCTTATGTGGATGACATCACTGTGGTGACTGACTTCTTGGATAACACtgGTCTAGTCTACTACAAGGTGTCAGTCCAAGGTGCTGCCACAGCCACCATGAAGGCCACTTTGATGGACCAAAATGCCCGCTGCGTGGCTTCCTCCAGCGGGCCATCTGGAGTGCTCAAAGTAGTAGATGTCAATCTGTGGTGGCCGTACTTGATGCATGAGAATCCAGCTTACCTTTACTCTATGGAGGTTCGCTTAATGGCAACCGATGGCCGATCCACGTATGAGGATGTGTATACTCTACCAGTCGGCATCCGCACAGTCAACGTTACCAGCACACAGTTCCTCATCAACAACAAGCCCTTCTATTTCCATGGAGTCAATAAACATGAGGACTCTGATATTCGAGGTAAAGGCTTCGACTGGCCCCTGATTGTCAAGGACTTTAACCTATTGAAGTGGTTGGGGGCCAACTCATTCCGCACCAGCCACTACCCCTATGCTGAGGAGATCCTGCAGATGTGTGACCGCCATGGCATTGTGGTGATAGATGAGTGCCCGGGGGTGGGCATCGCAGATAGTCGCAGTTTTGGAAACTCCTCCCTGGCCCATCACCTAGCTGTCATGGACGAGCTTGTACATCGGGACAAGAACCATGCCTCTGTGGTCATGTGGTCAGTAGCCAATGAGCCGGCTACAGAGATGCCCCCTGCGGACTTCTATTTCAAgaccTTGATAACACATACCAAAGTTCTGGATCCAACCCGGCCTGTCACTTTTGCCACAAGAACTGACTATGCCAGTGACAGAGGGGCTCCCTATGTGGATGTAATCTGCGTAAACAGTTACTTCTCCTGGTACTATGATCCAGGCCATCTGGAGGTCATCCCCATCCAGCTTAAAACTCAGTTTGAGAACTGGTATGGAAAGTACCAGAAACCCATCATCCAGAGTGAATATGGAGCAGATGCAGTGGCAGGGCTTCACAGTGATCCACCCGTGATGTTTTCTGAGGAGTACCAGAAGGCAGTCCTGCAGAGCTACCACAACGTGCTGGACCAGAAGAGGAAGCAGTATGTCATTGGTGAACTCATCTGGAACTTTGCCGACTTCATGACCGTACAAGGGATCTTCCGTGTGTTAGGGAACAAGAAGGGTATTTTCACCAGGGAAAGGCAGCCCAAAGCAGCAGCATTCATCCTGAAAGAGAGGTACTGGAGACTGGCAAATGAACAGAACCGGCTTGGACTAAATACCTCTGCTCATTCTGACACCCGCCAATTGGTGCACGCATTTCAGGACAGCCTTGACCCCATGTAAACACTATGCCTCATTGGAAAAAATGCTGGTAACATTCTGTCAGTTTCTGGAGGCAGTATAGTTAAGCACATACAGTTTAGACCATTTAATTAATTCACACTACTGTACTGTTAATGTGAATTGCAATGCTGAATCTAATcagaagtgttttatttttcaatgtgaAAATCAAGAGAATCAATTTTGATATGAATCAAGCTATTAAAgacaaaatactgtatgtactcAATATGCGAgctgtttgtatatatatatatattttttattttttttccaaagcatTCAGTTTTGTAGAGCAAGTGTACTTTGTAGTCTTTGCTGGTTCTCGAAGTCACTCAAACACtcaaaaaaactcaaataatAAGTGACGTGTTGATGGTGGCATGACTGCAATCAGACTGTAAGAAAAAAAGCTGGACAAATACTGATTATTTAGACTCTGCTTTAGATTTCTTTCAAACATTCAGTAGCTACAATAACAGTATACTTACTTACAAGATTTTGTAGACATATTAAAAGCCTTTTtagggactttttttttgtcttttgtgatgtttttttgggATTGGATCCAGCTGTAATTGCTATTTACACAATACATGTTGCACAACTGGAGATTAATGTGCCATTAAACACACTGCTCTTTCAACATTTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229524 lncRNA downstream 14598 27713939 ~ 27716932 (-) True G169255
TU229500 lncRNA downstream 29979 27668681 ~ 27701551 (-) False pigw
TU229497 lncRNA downstream 29979 27699376 ~ 27701551 (-) False pigw
TU229496 lncRNA downstream 29979 27700123 ~ 27701551 (-) False pigw
TU229510 lncRNA downstream 95511 27635596 ~ 27636019 (-) True G169241
TU229545 lncRNA upstream 2847 27749305 ~ 27749558 (-) True G169275
TU229565 lncRNA upstream 43598 27790056 ~ 27794788 (-) True G169289
TU229620 lncRNA upstream 185834 27932292 ~ 27932862 (-) False LOC120544024
TU229716 lncRNA upstream 301149 28047607 ~ 28054009 (-) False LOC120544668
TU229726 lncRNA upstream 416677 28163135 ~ 28203753 (-) True G169387
XM_039777629.1 mRNA downstream 1384 27718999 ~ 27730146 (-) True gusb
XM_039777631.1 mRNA downstream 1569 27718999 ~ 27729961 (-) False gusb
XM_039776774.1 mRNA downstream 32781 27693482 ~ 27698749 (-) True znhit3
XM_039776772.1 mRNA downstream 60128 27668770 ~ 27671402 (-) True pigw
XM_039778151.1 mRNA downstream 64794 27659196 ~ 27666736 (-) True ggnbp2
XM_039778500.1 mRNA upstream 53755 27800213 ~ 27873238 (-) True ca4a
XM_039778502.1 mRNA upstream 53755 27800213 ~ 27851219 (-) False ca4a
XM_039778497.1 mRNA upstream 53755 27800213 ~ 27811187 (-) False ca4a
XM_039778498.1 mRNA upstream 53755 27800213 ~ 27807374 (-) False ca4a
XM_039778495.1 mRNA upstream 69749 27816207 ~ 27832205 (-) False LOC120544612
XR_005636444.1 other downstream 1382 27719805 ~ 27730148 (-) False gusb
TU229438 other downstream 212546 27515892 ~ 27518984 (-) False emc6
TU229110 other downstream 1039300 26688879 ~ 26692230 (-) False gng3
TU229104 other downstream 1046574 26681514 ~ 26684956 (-) True G168964
TU229028 other downstream 1152270 26574975 ~ 26579260 (-) False ammecr1
XR_005636427.1 other upstream 184081 27930539 ~ 28027777 (-) False LOC120544024
TU229743 other upstream 470785 28217243 ~ 28223250 (-) True srrm3
XR_005642041.1 other upstream 567979 28314437 ~ 28347490 (-) False LOC120575713
TU229887 other upstream 908699 28655157 ~ 28664051 (-) False ube2g1a
TU229954 other upstream 1057927 28804385 ~ 28808430 (-) False atp5l

Expression Profile