RNA id: TU229524


Basic Information

Item Value
RNA id TU229524
length 2994
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G169255
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27713939 ~ 27716932 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCACCAATCCTTTAATGTCACAGTAACAAAAGTATTACATTTAGCAGTGATCCCCATTTAGTTCAGTCACTCTTATTGTACGTTTAAcagcatttcatttcattcaaatgAGCTAAAATGACAGGTAGTTTCAGAGGGAATGTTTTAATGGTAGATCATTTCCACATGACAATGACACAATTATAAATGTTTTCATGTCAACCTTTTCCACAGTTTTCCCTTAAAGTAAGCTGGATTTAAACAGATTATTTTTGCACCCTCTTACCATTCATGTAACACTTTTCCATGTAAGAAAATACagcattttaaaacatatttggcAATACAGAAGCAAACCCGGTAAGTTTTCCTccacaaataaatgtaataaacacTTTATGCTGACACATGGATTCCTAGCCCTCCAACCCCTCAACGTTTTTACTAAAATAACCCCGCATGTTAACAGTCTATACAGCTAAAGGGCATAATTAATGATGAAAAATAACATTACAATCATGTAGTTTAAACCGAGCGTATTCTTGGCTAACAAACGTCCTAGCTAGACAAAATAAAGATAATTATATAGTgaagttgaagaaaaaaaaagggaatgaCTTAATTTGATGGGGCAATTTGTCTGGCATTCTAAATGGACTTTTGCACTGATACTGGATACCAAATCTTTGGGACTTACCAATTTATCAGATTACATTTTAAGAAAGGCAAACAGAAGTGCCCGTTAACATTTACCATTCTTCATTTTACAAGGCTATTACTGTTGCTCGTCTTTGGCTCAAGGCCTAGTGATCAAACAGAAGGCACTTTTGTTGGCATTGGTGATGCAACTAACATGGCAGTTATACCTCAGGGCCtaaatgaatattcatgagaaTGCAGTAGCGATCGTTTTGACCTCTGTTTAGACATTAAATCATCACACGTGTTACCAGCCAAAGATTTCAAACTGTTGACTCAACATCCAAATTCCTTAGCCATTTCTTTAAAGTAACTACACACCACTAGTGTAATAGGCTTGCATATGACTGGAATGGAACATCATGATAAACTACCTACAGTACACTTGTCAGTTCTATAATCGATACTCGCAGGATCTATAGTTGTTGCCACAGAAAACTCGCAAGTTATGTGAGTTTGAGTTGTGCAAGTGAATCCATAGGAGACTTGTCTTATTTGTGAGTGCACAGGCTTTCCCCGACAAAGACCAAACAGCGTGGTTGTTAAATCTTCTGAGTGGAGATGAAACCGAACCTGATGGGAGCCCGACAAGGCAACACTGTATAAGGAAGATCTTTAAAGATGACTTGCTAAGAAATGAGGCAAACATTTAAATCCTCCTCTGGATGACCATACAGTTTGTTAAAAAGGACTGTGTTGGTGCTTGCGTGTTGTTGCCAGTTTACTACCAATCGTGTTATATATCGTAACTGCCAACCATTTTCCAAAGCAAACCATAGCGTTCAAATGAGTCTCTTCCAGGCAGCCATTGGTTCCCATTCTTTTCTGTATGGCATGAAAATCAACTCGCAAAGATTTGAAATGtgttaagggggggggggaactccACAGATTTTACACATCCGAATTGTGTGTACAGGTGTTGTGGAGCACTACTCTACATGTGAACAAAGTTGTATCAAACCTTCTGTGgcgttagaaagaagtgagctcACCAGACCTCTGTAACCCACTTCTCATCTCCGTCTGAAGCAGGCGGTTAGAAGCTATATTAGCCACTCTTagcccagtggttctcaaacttttttcaataatgtacctctttttaaatatttttttcagccCCGTACCCTCTGAGCAGCGCTCAACATTTTTgggtagaaaaaaaataaataaactacataaAGAGGTACAACGCTGCGCCTGTTAGGCTAAACATCAACCTTGTAATGCTAGCCTagatttcaaatgtttaggATCCATCAAATTCATTTGTTACAGTATTATTTAAGGATtatgaatttaaaaagaaaaaacatctaACGTAACCCCCTGTGGTACTCCATAGTACCCCCCGAACCTCCGGCCGAACTGTTGGCGGGCAATCTTTTACGTTTGGTTAACCATCAGAGCGAAAGTGAAGTCTAGACTTGGCTACTAGGCTGCCAAACTGCATCACATGTTATCAGTTCTACTGAAACCCAAAGGACAAACACTGACATAGTGAACAGTACATGTGATCTTCACTGTGAAGGATTAAATGCAGGAAGCATCTCATCACAAAGTGAAATCAATGGAAACCATTGTCTGCCTGATGAAATTTATCTTGAATATAGAGCACACATTATGCTTTGGAAAATGGGTAACAATAATGTAACAGCCTATATACACAAGTAGTAAATGGGTTAcaacagacaacattttcactCTGACAATCTCCTGGGGGGGGAACCAATATCACCTCAATTTCCATTTTAACAGACAAGTGATGACTTCATACGTCATCACAGGGAGCACACGTCACTGAGATTACTTTCCTGGCAGTTGCTATCATCAATACTTTAACAACCGTcacgcacaaaaaaaaaaaaaaaatctgtcaggGAGAACTTGAATTATATTAAAGTGAAGGGGGCATGGAGACTAGAAGACAGTGATGAAAACTGTTATAAAAGCTGGTTTTACACCACAGATGAATCACATTATTACGACTGTTCTGGATCtttgacagtgtgtgtataaGATTGTCCGATGGCCAACATATGCTTAAAGCCAGGAGGTGGTTTACCATGCATCTGAATACTTTAATCATTGGATTCTGGATGGAAAAGAGAACAATGGTCCTACTCTGTCAGTTGGTGCTGAACTGACAATACTGTGGATTTCTAGCAAGGCCGCTAACCAGCAGCTGCAGTTGCTTTTTCCCTTTACTGTGATCTAGCTCTATACAGACCTTGCTATGTCAGATCAACCACTTCATGAAAAGCTTCAGTGTCTGCAGCTGTTcgatcttaaaaataaataaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229500 lncRNA downstream 12388 27668681 ~ 27701551 (-) False pigw
TU229497 lncRNA downstream 12388 27699376 ~ 27701551 (-) False pigw
TU229496 lncRNA downstream 12388 27700123 ~ 27701551 (-) False pigw
TU229510 lncRNA downstream 77920 27635596 ~ 27636019 (-) True G169241
TU229505 lncRNA downstream 110025 27602391 ~ 27603914 (-) True G169236
TU229545 lncRNA upstream 32373 27749305 ~ 27749558 (-) True G169275
TU229565 lncRNA upstream 73124 27790056 ~ 27794788 (-) True G169289
TU229620 lncRNA upstream 215360 27932292 ~ 27932862 (-) False LOC120544024
TU229716 lncRNA upstream 330675 28047607 ~ 28054009 (-) False LOC120544668
TU229726 lncRNA upstream 446203 28163135 ~ 28203753 (-) True G169387
XM_039776774.1 mRNA downstream 15190 27693482 ~ 27698749 (-) True znhit3
XM_039776772.1 mRNA downstream 42537 27668770 ~ 27671402 (-) True pigw
XM_039778151.1 mRNA downstream 47203 27659196 ~ 27666736 (-) True ggnbp2
XM_039778281.1 mRNA downstream 55702 27637955 ~ 27658237 (-) True dhrs11a
XM_039777427.1 mRNA downstream 88116 27605381 ~ 27625823 (-) False LOC120543974
XM_039777628.1 mRNA upstream 2067 27718999 ~ 27746458 (-) False gusb
XM_039777629.1 mRNA upstream 2067 27718999 ~ 27730146 (-) True gusb
XM_039777631.1 mRNA upstream 2067 27718999 ~ 27729961 (-) False gusb
XM_039777630.1 mRNA upstream 14598 27731530 ~ 27746458 (-) False gusb
XM_039777627.1 mRNA upstream 14598 27731530 ~ 27746458 (-) False gusb
TU229438 other downstream 194955 27515892 ~ 27518984 (-) False emc6
TU229110 other downstream 1021709 26688879 ~ 26692230 (-) False gng3
TU229104 other downstream 1028983 26681514 ~ 26684956 (-) True G168964
TU229028 other downstream 1134679 26574975 ~ 26579260 (-) False ammecr1
TU228619 other downstream 2809132 24764999 ~ 24904807 (-) False LOC120544362
XR_005636444.1 other upstream 2873 27719805 ~ 27730148 (-) False gusb
XR_005636427.1 other upstream 213607 27930539 ~ 28027777 (-) False LOC120544024
TU229743 other upstream 500311 28217243 ~ 28223250 (-) True srrm3
XR_005642041.1 other upstream 597505 28314437 ~ 28347490 (-) False LOC120575713
TU229887 other upstream 938225 28655157 ~ 28664051 (-) False ube2g1a

Expression Profile