RNA id: XM_039777427.1


Basic Information

Item Value
RNA id XM_039777427.1
length 1973
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC120543974
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27605381 ~ 27625966 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGGGAACTGCCACACCGTTGGACCGAACGAGGCCCTTGTGGTTTCAGGTGGTTGCTGTGGCTCTGATCAGAAGACGTATATTGTGGGAGGCTGGGCTTGGGCCTGGTGGCTCATCTCTGACATCCAGAGGATAACGCTTGAGATTATGACCCTGCAGCCCAAGTGTGATGATGTAGAGACAGCGGAGGGTGTAGCTATTACTGTCACTGGGGTGGCTCAGGTGAAGGTGATGACAGAGAATGAACTGCTGGGTTACGCCTGCGAGCAGTTCCTGGGGAAGTCAGTCGTGGAGATCAAGAGTGTCATCCTGCAGACCCTTGAGGGTCACCTGCGCGCCATCCTTGGCACCCTAACCGTTGAGCAGATTTACCAAGACCGAGACCGATTTGCCACTCTGGTGCGAGAGGTGGCATCACCGGACGTCGGCCGCATGGGCATCGAGATCCTCAGCTTCACCATCAAGGATGTATATGATAAAGTGGAGTACCTGAGCTCACTGGGCAAAACGCAGACCGCTGCAGTACAGAGGGATGCAGACATCGGAGtggcagaggcagagagagacgcTGGCATCAGGGAAGCTGAGTGTAAGAGAGAAATGATGGATGTTAAGTTCTTAGCTGACACAAAAATGGCTGACTCCAAACGAGAGCTGGAAATGCAGAAAGCTTCCTTTAATCAGGAAGTGAACACAAAGAAAGCAGAGGCTCAGCTGGCGTACGAGCTGCAGGCGGCCAAAGAGCAGCAGAAGATCTGCCTGGAGGAGATCGAGATCGAGGTGGTGCAGAGGAAGAAGCAGATCACTATTGAGGAGAAGGAGATCGACCGCACTGAGAAGGAGCTGGTGGCCACCGTGAAGAGGCCGGCCGAGGCCGAAGCCTACAGGATGCAGCAGCTGGCTGAGGGTCAGAAGATAAAGACGGTGCTGACGGCGCAGGCGGCGGCCGACAAAATCCGCCTGATCGGTGAGGCGGAGGCCTCGTCCATTAAAGCGGTGGGGAAGGCCGAGGCTGAGAAGATGAGGCTGAAAGCTGAGGCCTACCAGCAGTACGGCGAGGCTGCCAAGACAGCTCTGGTCCTGGAGGCTCTGCCCTTGATTGCCAGTAAGGTGGCTGCACCCCTGTCCCGGACCGGCGAGATCGTCATGCTGAGTGGAGACGGCAGCCGCGTGTCTGGAGAGGTGAACCGTCTATTAGCTGAACTCCCGTGTCCGTCAACGCCCTCACCGGGGTGGATCTGACTAAGATCCCTCTGCTCCAGAGGATGGTCGGCACACAGTGCCAAGCAACCGTCTGATGAACCAGGCCAGAGACTCTAAATCCTTCAACATTTATCTGCCTCAAGCATGAAAATAGTTTTTTCAGCCTCTGGCCCCTTATGCGACTGCCTTTGACCAGAAACACTTGACACCAaacaagagttttttttttttttatatttttaagagGTTTTTAATTTTCTAAGGGAAAAACAAGCTGGGGCCTTATTTCTAAAGGACCAGACTATATGTATCTTCTGATGGATTTAGTTTTAGACACATTGAATCCTCATCACACTGCACTAGTTAGCCAGGATTATATGCTGCCAtcctgtccaatcagagttggTCCACTTTGAATCTGGTGGTGTTAAAATTTATTTTAGAAGGAAAAACACCTCAGTCTTCAATAGTTGGAGCTGGAAAGAGTACAAAAAATTAAGGCCAATTCTGAATATTGTTCTCTGCTCCAGAGCTGTTAAAGGGTCTGCCTCAAATTTGGGGTGCACCACTTCCCTGTCAGGTGTTCTGGCCTTTATTCACCTTGGGGGCAGAGTGTCCAGCCTCTGCCTCTTCACCCTCAAACAGAGCCCAGTTAGTGAAGTAACTTGCAGTAGACTGAGCCCGGTGTGAAATGGGCAGCTTTTATTTCCTCATTGcttttaaaactctttatacatttttttttttatagatgaaTTAACTCTAACTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229505 lncRNA downstream 1467 27602391 ~ 27603914 (-) True G169236
TU229504 lncRNA downstream 1467 27602414 ~ 27603914 (-) False G169236
XR_005636418.1 lncRNA downstream 8817 27595820 ~ 27596564 (-) True LOC120543973
TU229495 lncRNA downstream 8836 27595831 ~ 27596545 (-) False LOC120543973
TU229488 lncRNA downstream 20457 27547868 ~ 27584924 (-) True G169226
TU229510 lncRNA upstream 9773 27635596 ~ 27636019 (-) True G169241
TU229500 lncRNA upstream 42858 27668681 ~ 27701551 (-) False pigw
TU229497 lncRNA upstream 73553 27699376 ~ 27701551 (-) False pigw
TU229496 lncRNA upstream 74300 27700123 ~ 27701551 (-) False pigw
TU229524 lncRNA upstream 88116 27713939 ~ 27716932 (-) True G169255
XM_039777421.1 mRNA downstream 24542 27548915 ~ 27580839 (-) False fam222ba
XM_039777419.1 mRNA downstream 24542 27548915 ~ 27580839 (-) False fam222ba
XM_039777422.1 mRNA downstream 25650 27548915 ~ 27579731 (-) False fam222ba
XM_039777420.1 mRNA downstream 25678 27548915 ~ 27579703 (-) True fam222ba
XM_039777413.1 mRNA downstream 86380 27515890 ~ 27519001 (-) True emc6
XM_039778281.1 mRNA upstream 12132 27637955 ~ 27658237 (-) True dhrs11a
XM_039778151.1 mRNA upstream 33373 27659196 ~ 27666736 (-) True ggnbp2
XM_039776772.1 mRNA upstream 42947 27668770 ~ 27671402 (-) True pigw
XM_039776774.1 mRNA upstream 67659 27693482 ~ 27698749 (-) True znhit3
XM_039777628.1 mRNA upstream 93176 27718999 ~ 27746458 (-) False gusb
TU229438 other downstream 86397 27515892 ~ 27518984 (-) False emc6
TU229110 other downstream 913151 26688879 ~ 26692230 (-) False gng3
TU229104 other downstream 920425 26681514 ~ 26684956 (-) True G168964
TU229028 other downstream 1026121 26574975 ~ 26579260 (-) False ammecr1
TU228619 other downstream 2700574 24764999 ~ 24904807 (-) False LOC120544362
XR_005636444.1 other upstream 93982 27719805 ~ 27730148 (-) False gusb
XR_005636427.1 other upstream 304716 27930539 ~ 28027777 (-) False LOC120544024
TU229743 other upstream 591420 28217243 ~ 28223250 (-) True srrm3
XR_005642041.1 other upstream 688614 28314437 ~ 28347490 (-) False LOC120575713
TU229887 other upstream 1029334 28655157 ~ 28664051 (-) False ube2g1a

Expression Profile