RNA id: TU229505


Basic Information

Item Value
RNA id TU229505
length 1524
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G169236
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27602391 ~ 27603914 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaggggggagggactgagaagttgttgatgttcagatttttttgggctaagtcctggatcttcccaatcctacctacagcacctttttaaatgttttagttttattttgccACGGACTGTTACAAAGTTATCCTAGTCACAccattgtctttattttctgtgaATAAACACAAGGCTTGAGGCTTGTTTTGGTCTGAGCAAATGTCATCTTGTTTCTGTTCTTGATGTGAATGTTGCAATTTTCTTTCAGGTTTCAAATgtgtttctgcaacaattttagCCACTGTAAATGTTGGCTGCCTGGCTTGCTGCAGATACAATAATATTATTAAGCTATTGATGTGTAATATTCTTTGACATCATTTGAAATGGccagtgtttcttttctttttctttttttcacaagtGATTAGCAGCATCTAATATCAGCCATTAGCGATTCAAACCTGACAAAGATCACCTGATGATGCATACACTGTCCCAGTGTCAAACCGTGAGAACTCTCTGCAGCCAGCGGTTGCCCTTCAGTGTGGTCCATCAGAGGGATTTGAAATCTGCTGCACAATAGATGATTGGCAGTTTTCTATATCATTAGGCTATAAAAACCCTGATCTGGAAATGCAAAACTACCCACCTAAGGTAGTTTCTAAATACATTCAAGATGAGAAATGGTACAGTTGCAGAATCGTACGACAATTCAAAAAGTGGCAACTCCCGTGATGTTCTTTATTTGAGATGAATCAACCGTGAGTGGTGTTGTGTCCAGACTGAGCAAAGgttaaaacaatcaaaataaaatggttAACAACTTAGTATTTTACTTTGtaattctgtttttttattttttttttatttagaaaagtaGATGTTTCTTTGCTCAGTGCCTTTTGTTGTATAATAAAGAGGCCATTTATACCTAAGTGTGCAGTTTGACTATTAATCATACACATGGAAGTATGGGATATCCTTTCATGAATTTACTGTAAAACAGGCTGATTTGTAGAATGTGTAAACACTACACATATGTAGTGTTCCGCTGTAAGTTTTCCTCTTTCTACCTTTGCTGTTTTATGTACTTGACAACATTCTGTACTGCAAATGCACCGAGGAACACAGATCGGTAGATGATAAATAGAAATGTAGCATTGGGTAGCATTCAACATCTTTTCCTTTGGAATCTAGACATCCTTAAAGTCTGTTAAGTTCCTTATTTTGGCCATTCTATTGTGTGCCAAAATGACTTTGATTTGCATTGTCTAAGAATAGAGGCAACTTTCTGTTGCTCCATGGGGCATTCTAGAGGAGAATGTGACCAAACACTATAGACCTGCGCCTTAACTCTTGTCTTCATCTGTCGTCTGGAAATAATCTGTAATCTCTATTAAAACTAtattgtggattttttttttgtggcttctCATGTTACACTGGTCTTTGGAAGACTGATCCAGCATGGCATTTCAAGCATGTGTTCATGTTATTCTGTGTTGTGTGCCGCCCTACAATAAATGTTATACCACTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636418.1 lncRNA downstream 5827 27595820 ~ 27596564 (-) True LOC120543973
TU229495 lncRNA downstream 5846 27595831 ~ 27596545 (-) False LOC120543973
TU229488 lncRNA downstream 17467 27547868 ~ 27584924 (-) True G169226
TU229480 lncRNA downstream 74830 27526792 ~ 27527561 (-) True G169218
TU229479 lncRNA downstream 76238 27524949 ~ 27526153 (-) True G169217
TU229510 lncRNA upstream 31682 27635596 ~ 27636019 (-) True G169241
TU229500 lncRNA upstream 64767 27668681 ~ 27701551 (-) False pigw
TU229497 lncRNA upstream 95462 27699376 ~ 27701551 (-) False pigw
TU229496 lncRNA upstream 96209 27700123 ~ 27701551 (-) False pigw
TU229524 lncRNA upstream 110025 27713939 ~ 27716932 (-) True G169255
XM_039777421.1 mRNA downstream 21552 27548915 ~ 27580839 (-) False fam222ba
XM_039777419.1 mRNA downstream 21552 27548915 ~ 27580839 (-) False fam222ba
XM_039777422.1 mRNA downstream 22660 27548915 ~ 27579731 (-) False fam222ba
XM_039777420.1 mRNA downstream 22688 27548915 ~ 27579703 (-) True fam222ba
XM_039777413.1 mRNA downstream 83390 27515890 ~ 27519001 (-) True emc6
XM_039777428.1 mRNA upstream 1467 27605381 ~ 27625966 (-) True LOC120543974
XM_039777427.1 mRNA upstream 1467 27605381 ~ 27625823 (-) False LOC120543974
XM_039778281.1 mRNA upstream 34041 27637955 ~ 27658237 (-) True dhrs11a
XM_039778151.1 mRNA upstream 55282 27659196 ~ 27666736 (-) True ggnbp2
XM_039776772.1 mRNA upstream 64856 27668770 ~ 27671402 (-) True pigw
TU229438 other downstream 83407 27515892 ~ 27518984 (-) False emc6
TU229110 other downstream 910161 26688879 ~ 26692230 (-) False gng3
TU229104 other downstream 917435 26681514 ~ 26684956 (-) True G168964
TU229028 other downstream 1023131 26574975 ~ 26579260 (-) False ammecr1
TU228619 other downstream 2697584 24764999 ~ 24904807 (-) False LOC120544362
XR_005636444.1 other upstream 115891 27719805 ~ 27730148 (-) False gusb
XR_005636427.1 other upstream 326625 27930539 ~ 28027777 (-) False LOC120544024
TU229743 other upstream 613329 28217243 ~ 28223250 (-) True srrm3
XR_005642041.1 other upstream 710523 28314437 ~ 28347490 (-) False LOC120575713
TU229887 other upstream 1051243 28655157 ~ 28664051 (-) False ube2g1a

Expression Profile