RNA id: XM_039778489.1


Basic Information

Item Value
RNA id XM_039778489.1
length 5503
RNA type mRNA
GC content 0.53
exon number 19
gene id mtmr4
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27875127 ~ 27920265 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTGTTTCTGTGTCACTGCCCCATATGATGTTACCTGCTTATATAAGGATTACATCACCTGTATgtgtgcttttttctttttctttttttcttcaaaatgcACTGACTGGACACACCAGAAGCTCTCGGGTGAAGAAGGGCCTCCCAGTCTGGAGTATATCAAGGCCAAGGACCTGTTCCCCCAGAAAGAGCTGGTGAAGGAGGATGAAAGCCTTCAGGTGCCATTCGCAGTTCTTCAGGGGGAAGGGGTGGAATATCTTGGCTTTGCCGATGAAGCCGTCATTGCCATTTCTAACTACAGGCTCCACATCAAGTTCAAGGACTCTGTCATCAACACCTACCCAGGTGTGGACAATGAGATATCTGTGCCTCTCAGGCTGATAGAAAGTGTGGAGAGCAGAGATATGTTCCAGCtgcacatcatctgcaaagactCCAAAGTTGTCAGATGCCTCTTTGCAACGTTCAAGCAATGCCAGGAGTGGGTCAAGCGTCTGAACCGGGCCATAGCTCACCCGTCCCGACTGGAGGACCTGTTCGCCCTGGCCTATCACGCCTGGTGTCTGGGAGGCAACGCTGATGATGAAGACCAGCACGTTCATCTCTGTCGCCcagGTGATCACGTGCGTCAAAGAATGGAAATGGAGGTCAAGAGGATGGGCTTCGACACACAGAACGTCTGGAGAGTGTCGGACATTAACTGCAACTTCAAGCTGTGCTCCAGCTACCCGCAGAAGCTTCTGGTTCCAATATGGATCACTGACAAGGAGCTGGAAAGCGTGGCTTCCTTCAGATCCTGGAAGAGGATCCCTGTGGTGGTCTACAGGCACCAGAAGAACGGGGCCGTGATCTCCCGTTGCAGCCAGCCTGAGATCAGCTGGTGGGGCTGGAGAAACACAGATGATGAGTACTTGGTGTCATCCATCGCCAAGGCGTGTCAGATGGATGCCGGAGCCAAGGGTACCTGTGGAGCACCAGCCTGCCGACAACGCGGGGAAGCTCCCGACTCCTCCGATAGCGATTTTGACTCCTCTCTGACGGGTGGCTCTGGCTGCGATGACAACACTGTGCCACAGAAGCTACTTATTTTGGATGCTCGCTCGTACACCGCTGCAGTGGCCAACCGAGCCAAGGGCGGAGGCTGTGAATGTGAAGAGTACTACCCCAACTGCGAGGTAATGTTCATGGGAATGGCGAACATCCACGCCATCCGGAACAGCTTCCAAGCTCTAAGGACCGTCTGCAGTCAGATCCCGGATCCAGGAAACTGGCTTTCCGCACTTGAGAGCACCCGTTGGCTGCAGCACCTGTCCGTCATGCTGAAGGCAGCCACGCTGGTGTGTTCAGCGGTGGAGAGGGAAGGTCGTCCTGTCCTGGTGCATTGTTCTGACGGGTGGGACCGCACTCCCCAGATTGTAGCCCTCGCCAAGGTCCTGCTGGACCCCTACTACAGGACATTAGAGGGTTTCCAGGTGCTTGTAGAGACTGACTGGCTGGACTACGGTCATAAGTTTGGGGACCGCTGCGGCCACCAGGAGAACTCTGACGATGTGAGCGAGCAGTGTCCTGTGTTCCTGCAGTGGCTGGACTGTGTTCACCAGCTGCTCAAACAGTTCCCCTGCCTCTTTGAGTTCAATGAGGCCTTCCTGGTCAAGTTGGTGCAGCATACGTACTCCTGTCTTTACGGCACCTTCCTGTGTAACAACGGTCgcgagagagagacgaggaacATCTATAAACGCACCTGCTCTGTGTGGTCTCTGCTTCGCAACGGAAACAAGAACTTTCAGAACTTCCTCTACATCCCCAGTCATGATATGGTGCTGCAGCCAGTCTGCCACACACGAGCGCTGCAGCTGTGGACAGCTGTCTACCTGCCCACCTCCTCCCCCTGCACCGCTGTGGACGACTCTATGGAGCTCTACCTCCCCCCCAGTGTCACAGGAGATGAACTGACCTCCCGTTCCCTGGACagACTTCCCAAGACCCGCTCCATGGACAACCTGCTGTCAGCTTTTGAGAACGGGGTGCCCCTGACACGTACTTCGAGCGACCCAAATCTCAATAAGCACTGCCAGGAGGGTCGCTCTGCCCCAGAGCTTTCGCCAGCCACAGAGGAAACCTCTGCAGCCATCTCTGAGGAGGTCACACCTGACAACACTGGACTGGACACCCGTAAGGGGAAACCTCTGCATCTGAGTCCTGCCATGACCCCAGAGAGTGTCCCAGGTGCAGAGAGCTTTGAAGACACAGTGGAGGAGACCTGTCTCACCACACAGCCCCTGCCCTCTCTGCCCCTTCCCCCGGTCCCTCTCGGTAAGGACGTCGCACTCGCTCACATTTCCTTCCCGGCTCCTGTCCTCCAGCAGGCTTTGCCTCAGATCGCTAATTCTCCACTCCCACCGCCTCCGCTAGAGGCTGAGAGCCTGTGTAGGACAGCAGAGAGCACCACGTCGCCCACTCATAAATCCGAGCCGTGCTCATCTCTCCCCTGCAATGGCACTGAGCCTGCAGCCACCACACCCAGCTCGCTGCCTAACGGCCACTCTGGCAGCCAGTTAAACGGCTTCCCAGAATCTGCAGACCTGCTGGCTCTGAAGCAGCTGATACCACTACTTCCCATGGAGGACTCCACAGAGACTCTCACAGGTGAGGGAGAGCTCCCCCCAACCCTGCCCCCCACTGTGAGCCAGGATCTTACCCAGAATCATTTTAGTGACGAAGATCAGCCTGAGTCCCAGCCTGAGTCCCGGCCCCAGGTTCAACCCCAGACGGAGAAGGAGGACATGAGGACAGATGGAGTGAAAGGAAAAGAGCGTATGTTGACAGTTGCAGTAGCTCCTGTAGACTGCGCCCAGGCAGCAGCTCGCCATCTGATCGCCCAGAGCCAGATCACAGACCTGTCCCTGCTCGGCTCCCACTGGGAGAGCGTCCAGGGTCTGGTCCAGTCCGCCTGCAGCAGTGCCAGTCGCTCTGGCGTCAGCCGGGCCTTGCAGAGTAACACTTACCAGAGCCGCCGTCTTGCCAGTAAGCTGCTCCGCTCGCAGGGCTTCGCCAATGGGTCCCAGTGCTGCCGCAGAGAGGCTCTTTGTAATCCCAGCAGCCCTTTGCAGGCTGGCTGGCTGTCTGCTGCCAGGAGTGCAGCCTACACCGGCCTGTGTGGGCCTGCTGCCGCAGCCCTCAACAGCTACTCCTTGGCAGGCCATCAGCTCCTGCCAGTGTCATACTCCTCGCCCTCCGCCTCCAGCTCCCCACCCCCGCCCCAAGCCCCAGCTTACCTGGATGACGACGGGCTGCCGGTGCCCATGGATGCCGTGCAGCAGAGGCTGCGCCAGATTGAGGCCGGCTACAAGCAAGAGGTGGAGGTGCTGAGGCTGCAGGTGCGACAGCTGCAGATGAGGCTGGAGAGTAAACAGTACAGCACCCCTCCCTCGGAGCCAGACATTGATTATGAGGATGACATTACATGTCTGCGGGAGTCAGACAACAGCAACGAGGAGGACTCTCTGTCGACCCACAGTGAGGACCGTCTGTCTGAGGGCAGCTGGGACCGCGTAGAGCCCAAGGACACAGAGgtcACGAGGTGGGTGCCCGACCACATGGCCTCCCATTGTTTCAACTGTGACTGTGAGTTCTGGATAGTCAAGAGACGTCACCACTGCAGGAACTGTGGCAATGTGTTCTGTAAAGACTGTTGTCATCTGAAGCTGCCCATCCCAGACCAACAGCTGTATGACCCGGTGTTGGTCTGCAACATCTGCCACGACCTGCTCCTGGAGTCCCGCACCCGCGAGATCCGCAGCCAGCAGCTGAAGAAGGCCATCGCCACAGCCTCCAGCTGAGAGAAGCGTTGTGTAGCATGGCTCGCGCTTCGGCTCTGTCCTGCTCGTTTTGGACTGATAAGCTGAGCGCCCCGTTGTAACCCCAACCTGCTCTGGTTTCGGCTGCAGGggggaagatgaggaggagttGTTACTCTTTGGGAGGCTCAGTTTGGGAGCGGAGGTGCACTGTGAGACTGTCTGGAAGGCGGAGAAGAGGAAAGGGAATGTCTGAGATGGAGCGTTTCAGCGGGGGAGGTTTTCCTGCAGAACAAACCCCTTCTGTTCCAAGACATTTTCAGCCCGGAGCACCGCAGCGCCCAGCTGCCTCCACACATGCCCTGTCCGAGACACATCTCCAACCTGTCCACCCCATCAGAGTCACCCACCTTTAGTACCAAACACCTGCACCCTCCTCACAGACACTGTCTCGCACTTCAGAGGACAATCGCTCACCCTTCCACGTGTCGGGGACTCCAAAGCCTTTACCTGTACTACTGGAGGCTTTcaactttgaaaagaaaagaattgcTGCTACAGTATTTAAAAGTCTAATTTTGTATTCTTATTTTGTGCACTACTAGCTGTTGTTGTATTTGAGGGAATTTGAGACCAAACTTGAGTAAAAGGGAGAAATCTGCTGTTTACTTCGTCATTGCATCTTTTTCTTGGAGCCTGAATGTAATATGTAATGGATAACTGGATCGAGTTTATGTTAATGTACATTTGGTGGGTCGTATATGTGTTCATTGCTGCAATGTGTTTTCAAAATGATGTATATGCACAGTTAATGTGGTTCTGTCTTTTATCAATGCTTTTCTCCAGTATAGCCGTGTTGGGACATTCGACGTTCTGAGGGATGTGTGGACCGATCGATGCAATGCTGCGTGTTTGTTTTGCCGGGACGTGTGCTTGATGTGTTAAGAGGAAGAGAAGACAATAACGTTGGGAGACAGCAGATGTCTTCTTCTGATGtaagaaaatgtaatttgaaGGTACTGTGGGTATTCTGGGATGTGACAGAGGTAAGGTTTTCCTGCTGAGATGTTTGTGAACGAATGGCTTAATGTCCACATGAAGCTTGATGTCCATCTGACTGGTGACTCCTCCTCAGATTGTGAACCGGCAGGAAAGACTGCTCGGGAAAAGACTGAACAAAGTGCTTGAGGTTTCTTGTTCTGTTTAGGGGAGTTTGACAACGGTCCCCTCttcaaaaaatgtgtttgtgtctactgGTTGTTCCTTGAGACAATAGTGccatattttgttttgtctatttttaaagcCTTTTTCTTTCTTATGGATTGCAGCAGGTTTCTAATCGGCCACCCTCTATGTTTTAATGGTACAGATAGTAAGCTGCGTAAtaacacagacaactaaagattAACAGATGGTGCGGTTTGATGACAAGGCTAACCTTTTCAATGGATCATCGGATGTCACTAAATTAGTTAACCTTTTTGTGGTCATCCATTGTGGTTCTCCATAATATTTGGGATTTTTTTCAACACTGTGTTCATAAAGTCAAACTCTTTAAGAGGAACTCAGAAATGTAACATTCATAGTAATCTGATCCGTAGTGGTGGCTTAAAACCTGTCACTTAATGAATAACTGTTGTAAAGAAATGCACTGTAAAAGTTAAATCCCATGGgttaaaataaaagattataTCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229565 lncRNA downstream 80339 27790056 ~ 27794788 (-) True G169289
TU229545 lncRNA downstream 125569 27749305 ~ 27749558 (-) True G169275
TU229524 lncRNA downstream 158195 27713939 ~ 27716932 (-) True G169255
TU229497 lncRNA downstream 173576 27699376 ~ 27701551 (-) False pigw
TU229620 lncRNA upstream 20140 27932292 ~ 27932862 (-) False LOC120544024
TU229716 lncRNA upstream 135455 28047607 ~ 28054009 (-) False LOC120544668
TU229726 lncRNA upstream 250983 28163135 ~ 28203753 (-) True G169387
TU229747 lncRNA upstream 322438 28234590 ~ 28234949 (-) True G169399
TU229750 lncRNA upstream 418500 28330652 ~ 28330971 (-) True G169402
XM_039778499.1 mRNA downstream 1889 27861022 ~ 27873238 (-) False ca4a
XM_039778495.1 mRNA downstream 42922 27816207 ~ 27832205 (-) False LOC120544612
XM_039778496.1 mRNA downstream 44797 27816207 ~ 27830330 (-) True LOC120544612
XM_039778497.1 mRNA downstream 63940 27800213 ~ 27811187 (-) False ca4a
XM_039777525.1 mRNA upstream 18387 27930539 ~ 28027777 (-) False LOC120544024
XM_039777524.1 mRNA upstream 18387 27930539 ~ 28027777 (-) True LOC120544024
XM_039776776.1 mRNA upstream 116199 28028351 ~ 28033616 (-) True hsf5
XM_039778588.1 mRNA upstream 135508 28047660 ~ 28122617 (-) False LOC120544668
XM_039778585.1 mRNA upstream 135508 28047660 ~ 28122617 (-) False LOC120544668
XR_005636444.1 other downstream 144979 27719805 ~ 27730148 (-) False gusb
TU229438 other downstream 356143 27515892 ~ 27518984 (-) False emc6
TU229110 other downstream 1182897 26688879 ~ 26692230 (-) False gng3
TU229104 other downstream 1190171 26681514 ~ 26684956 (-) True G168964
TU229028 other downstream 1295867 26574975 ~ 26579260 (-) False ammecr1
XR_005636427.1 other upstream 18387 27930539 ~ 28027777 (-) False LOC120544024
TU229743 other upstream 305091 28217243 ~ 28223250 (-) True srrm3
XR_005642041.1 other upstream 402285 28314437 ~ 28347490 (-) False LOC120575713
TU229887 other upstream 743005 28655157 ~ 28664051 (-) False ube2g1a
TU229954 other upstream 892233 28804385 ~ 28808430 (-) False atp5l

Expression Profile