RNA id: XM_039778495.1


Basic Information

Item Value
RNA id XM_039778495.1
length 1079
RNA type mRNA
GC content 0.51
exon number 8
gene id LOC120544612
representative False

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 27816207 ~ 27832205 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAGTATAAGACCCCCTGCAAGAATGCAATCACATTGGAAAAAACAAGtcattgtgttgtcttccccagGTCGAGTCAGCTCCAAAATGCAGCAGCTAATCCTGCCCGTTCTCCTGGCATCCTTTTGGACCATCTGCACAGGATCAGGAGattGGTGCTATCAGTCCCAGTTCACCTGCGATAATATGTGCAATAcACCAGACAAGTGGGGCGAGACCTACAGCGACTGTGTTGGAAACTCCCAGTCACCCATCAACATTGTCACCAAAAACACTTTGAAAGACGAACGACTGACTCCTTTCATCTTTACCAACTACCAGGAGGTCTTCAGTGACACGATAACGAACATCGGCTACTCAGTTAAGGTTGGAGTTCCTACCTTCAGCACCATCTCAGGTGGAGGCCTCCCGACCACCTACAAGGCTTTGCAGTTCCTCATGCACTGGGGCAACAGCGAAAGGCCCGGTTCTGATCATACCATCGATGGAGAGCGGTATCCCATGGAGCTGCACATCGTTCACGTGAAGAAGGATTACGATGATCTGGAAACAGCTCTATCAGACCCAGAGGGAGTTGCAGTCCTTGGGTTCCTCTTTGAGACGTCCAAAACAGCAAACCAATGGTATGACCCCATCATCGGCGCTCTGCCAAGCATCACAGCTATAGATAGCGAAGCTCCTCTGGAGTCCATCTCCCTGGCACAACTAATCCCAAATGAGACGAATCTGACCAGCTTCTACCGCTACAAGGGCTCTCTGACCACCCCAGGGTGCAATGAGGCTGTAATTTGGACTGTCTTTAAGACTACCATCCCTCTGAGCATGGATCAGCTAACGGTGTTCTCTGAGGTTCTGCTCGAAGATGAAACGCCAATGGTGGGGAACTTTAGGCCGGTTCAGCCCCTGAACGATCGGAAGGTGTTCCGGTCGGGAGGCGCAGTGATCCTGGTCAGTTCTGCCCTTCTCCTGGCCGCCATCGCCACGGCCTTGGGACTGTCGCAACCCAACTAGAGCAAGGCATCCTGTGCTGCACTGCGACATCCATGAACACAATAAATTCAGTTTGACTCCTCAGCTCAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229565 lncRNA downstream 21419 27790056 ~ 27794788 (-) True G169289
TU229545 lncRNA downstream 66649 27749305 ~ 27749558 (-) True G169275
TU229524 lncRNA downstream 99275 27713939 ~ 27716932 (-) True G169255
TU229497 lncRNA downstream 114656 27699376 ~ 27701551 (-) False pigw
TU229620 lncRNA upstream 100087 27932292 ~ 27932862 (-) False LOC120544024
TU229716 lncRNA upstream 215402 28047607 ~ 28054009 (-) False LOC120544668
TU229726 lncRNA upstream 330930 28163135 ~ 28203753 (-) True G169387
TU229747 lncRNA upstream 402385 28234590 ~ 28234949 (-) True G169399
TU229750 lncRNA upstream 498447 28330652 ~ 28330971 (-) True G169402
XM_039778497.1 mRNA downstream 5020 27800213 ~ 27811187 (-) False ca4a
XM_039778498.1 mRNA downstream 8833 27800213 ~ 27807374 (-) False ca4a
XM_039777628.1 mRNA downstream 69749 27718999 ~ 27746458 (-) False gusb
XM_039778499.1 mRNA upstream 28817 27861022 ~ 27873238 (-) False ca4a
XM_039778493.1 mRNA upstream 42922 27875127 ~ 27920265 (-) False mtmr4
XM_039778494.1 mRNA upstream 42922 27875127 ~ 27916344 (-) True mtmr4
XM_039778489.1 mRNA upstream 42922 27875127 ~ 27912152 (-) False mtmr4
XM_039778490.1 mRNA upstream 42922 27875127 ~ 27912151 (-) False mtmr4
XR_005636444.1 other downstream 86059 27719805 ~ 27730148 (-) False gusb
TU229438 other downstream 297223 27515892 ~ 27518984 (-) False emc6
TU229110 other downstream 1123977 26688879 ~ 26692230 (-) False gng3
TU229104 other downstream 1131251 26681514 ~ 26684956 (-) True G168964
TU229028 other downstream 1236947 26574975 ~ 26579260 (-) False ammecr1
XR_005636427.1 other upstream 98334 27930539 ~ 28027777 (-) False LOC120544024
TU229743 other upstream 385038 28217243 ~ 28223250 (-) True srrm3
XR_005642041.1 other upstream 482232 28314437 ~ 28347490 (-) False LOC120575713
TU229887 other upstream 822952 28655157 ~ 28664051 (-) False ube2g1a
TU229954 other upstream 972180 28804385 ~ 28808430 (-) False atp5l

Expression Profile