RNA id: XM_039826547.1


Basic Information

Item Value
RNA id XM_039826547.1
length 3260
RNA type mRNA
GC content 0.56
exon number 17
gene id LOC120575713
representative True

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 28314169 ~ 28347490 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATAGTATGCTGTTACACAACAGTCCACGCATATTGTCCAGAGCTGTGCAGTTGAAGGAGACAGTTGTCTCTCAGCTGACAGATGAGGGACCTCGGTGCTGTTAGCAAGCGGCACTTCTTTCAGGAGGTATTGGAGTATCTGAAGAAGAGGAGGGGTCAGCTGAGGAGAAAGTTAACCGTTTTGGCGGACACTCGACACTGAATGTAAACGCACCATGGCGGGCAAAGGAAGAGTTTGTTCCGCCGGACAGAGCCAGCTCCAGGACTCCTCAGACTCTGACTCGGAGGCTCGCGTGGCAAGTACCGGGCCGTTCGCCGGCTCCTTCCCCTGCACCCAGGTCATCCACAGCGGACACTTCATGGTGTCGTCCCCCCACAGCGACTCGGCGCCGCGCGGGAGGAACAGCGGTGGGTCCACGAGATATGACTTCGACACGGTGAACAGGACGTGGTGCCAGACGTACCGGTACGGCCCGCAAAGCTCCGGGAGCCTGAGCATCGACCCCACTCTGACCCGCCTGTTTGACTGCATGTCCCTGGCCTACAGTGGTAAGATAGTCTCTCCCAAGTGGAAGTCTTTTAAGGGTCTGCGGTTGCTGTGGAGGGATAAGATCCGTCTGAACAATGCGATCTGGAGAGCTTGGTTCATCCAGTatgtggagaagaggaagaaccCAGTGTGTGGCTTTGTCACACCGCTGGAAGGCTCAGAGGCCGATGCACATCGAAAGCCTGAAGCTATTGTCTTAGAGGGCAGCTACTGGAAGCGAAGGATCGAGGTGGTGATCAAGGAGTATCACAAGTGGAGGATTTACTACAAGAAGAGGctTCAGAAAAAGAAGGATGATATTCTATCAATGCTACAAGAGGGTCAGATCTGCCAGGCCAAGCTGGAGAAATGGTCCAATCAGATGTACCAGGAGCCCGAGGCTGCGCCGGTGGAGGTCCACATGTTTGACCTGGACTGCCTTCTGTCCGACATCTCCGACACCCTGTTCACCATGACGCAAAAGCCTTGTCCCTGGGCCGGTGACCGACACGACACGTACACAAGCAATGCAGATATAATCCAGCCAGGCCTGACTCCACTACAGCCCAACCTGGAGGATTTCATGGATATACCagATATCTTTATGAACTACCGGGGCCAGCCCACTGAGCAGATTGGTTTTGCTGACTGTGGCTATTTTGAGAGTTCATCCAGCACAGCGTTTGCTCCACTTCCCTCCCCTGTGGTAACCACTCCGCAGCTACTTCTCGACACCCAGCTGGCTCAGCCCAATCTGTCATCTGACAATTTGCCTCAGCCCTCCTCATCCAGTACCCGACCAGACCAGAGCAGGCCGGGCCAGGGTTGCGGTGAATACCACGCATCTAGCATCATATCAGGGGCCATGCCATATGGACACCAGTCATACCCTGCTCCACCTGTTTCCGTAGCATTCACCACCGGCATCGAGCAGCCGGCCTCTTCAAGTATCCCTTTCCTGTACCCGCCGCCCTGCCATAAGTTTGGCTACTACACGACGACCAGCGTGACCCCCACTGTCATCACTCACACCGCCTCCACCATGGGGGCCCAGGGCTCTGTGCACCAGCCTCACGGTTACCCTCACACAGGGGACCCGTACCCCCAGACTCCCTGCCACTCTCTCAGTTACCCGGCCGCTGCGTCTGACCCGGCCCACGCAGCGCTGCCCTCGGTCACTGCGGCCCACTGCTTCTCCGTCCCCGAGCAGGTGGCTGTTCCAGGGCTCAGAGGGAAGCACAAGCAGAAGACGGGAGGAGCGAGGACAGTCGGTTCCTCTGTGGCTCTGTCTGGACCCCCCTCAACGCCACCCACCCCCACTAGCTGCCTGGCGAAGCTGCTCTCCTCCAGCGCCCGCGAACGGAAGCCATCTCTAGGATTTGATACTCTAGTGGCAGCCAAAGGTCGGAGGTCATCATCCCCCAGTTCCTTGCAGTCCAGCAGCAGCACGCTTCATCGAGGAGCTTCATCGCAGCTGCAGCATGGCGCTGCTTGGCCTGCAGGGATCCCAGCGTTGACTCCTCTGCACAGCCAGAGTGCCCCCCTGGGACACAGCGGCCCCCACGTCAGCACCTCCAGAGGCTCGGCGGTGTCGGCCCTGCTCAGCCACGGCTCCGCATACACCGGAACAGCCCTCCTCATTCCCAAGACGGAGAAACTGTCTCCGGTCCAGctctacggcaccgacaggagCAGCCTAACAGTGAATTTCCCAGGACATCCAGGCCAAACATCACCACCAAACCCTTTAGATAAAACCTCCAACCCCGAGTCCCCACACTCATGCTTCTCAGTACAGGGAAAGATAGAATCAAGTAAGCAAACGGAGACCAGGAGGATAACGCACATCTCAGCTGAGCAGAAGAGGCGCTTCAACATCAAACTGGGTTTTGACACATTACATAACCTCGTGACAACACTCAGCTCTCAGCCAAGCATAAAGATCAGCAAAGCCACCACGCTGCAGAAGACTGCCGAGTACATCGGTAAGATGCAGCAGGAGAGAGCTCAGCTGCACGACGAGGCTCAGAGACTCCGAGAGGAGATCCAGCTCCTCAACTCTGCCATCAATGCGTGCCAGCAGCAGCTTCCAGCCACTGGTGTGCCCATCACACGGCAGCGCTTTGACCACATGAGGCAGAAGTTCCGAGAGTACGTCCAGGCACAGACGCTGCGAAACTGGAAGTTCTGGATCTTCAGTATCATCATCGAGCCGCTGTTTGAGTCCTATAATGGAATGGTGTCCACTGCCAGTGTGGAGGACCTCTGTCGGTCCACTCTGTCCTGGCTGGACCAACACTGTTCCCTGCCTGCCCTGAGACCCATGGTTCTGAGTTCACTCCGTCTCCTGAGTACCACCACGGCCATCCTGACAGACCCCAGCCTACTGCCGGAGCAGGCCACCCTCGCTGTCACCCAGAGCCACCCCGCTGCTGTCCTGGACCACTCCTTACAGCCCGCCACTCGGGACAACATACACCCCATGTGACCGCGAAGAACAGACTCATTGGAAAGTGAACTGGAATCCACCATAATGCACAGGAGGAGAGCCTGTGCAATGATTCAAAATAGACTCAACACTCAGCTCCGGGACTTTCAATAATGCATAATCACATTCCTATTAAACTTACCAGCTGCAAAAATAATGTATTCCAGTACACCTAAAACATCATAGGAACTATTTGTGATCTATGCTTTAATTCTGATAAAAGCATAAGTTAGTTGGACTAAA

Function

GO: NA

KEGG:

id description
K09113 MLX; MAX-like protein X

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU229747 lncRNA downstream 79220 28234590 ~ 28234949 (-) True G169399
TU229726 lncRNA downstream 110416 28163135 ~ 28203753 (-) True G169387
TU229716 lncRNA downstream 260160 28047607 ~ 28054009 (-) False LOC120544668
TU229620 lncRNA downstream 381307 27932292 ~ 27932862 (-) False LOC120544024
TU229565 lncRNA downstream 519381 27790056 ~ 27794788 (-) True G169289
TU229767 lncRNA upstream 9525 28357011 ~ 28357377 (-) True G169417
TU229804 lncRNA upstream 49494 28396980 ~ 28399180 (-) True G169447
TU229900 lncRNA upstream 352335 28699821 ~ 28704621 (-) True G169524
TU229929 lncRNA upstream 405789 28753275 ~ 28755551 (-) True G169550
TU229931 lncRNA upstream 410057 28757543 ~ 28761645 (-) True G169551
XM_039826551.1 mRNA downstream 1036 28219395 ~ 28313133 (-) False srrm3
XM_039826550.1 mRNA downstream 34468 28218961 ~ 28279701 (-) False srrm3
XM_039776633.1 mRNA downstream 49757 28219395 ~ 28264412 (-) False srrm3
XM_039826546.1 mRNA downstream 102050 28207663 ~ 28212119 (-) True hspb1
XM_039778593.1 mRNA downstream 191551 28051590 ~ 28122618 (-) False LOC120544668
XM_039777648.1 mRNA upstream 1130 28348616 ~ 28356555 (-) True LOC120544092
XM_039777646.1 mRNA upstream 11291 28358777 ~ 28367461 (-) True dhx33
XM_039777647.1 mRNA upstream 11291 28358777 ~ 28367167 (-) False dhx33
XM_039778141.1 mRNA upstream 51881 28399367 ~ 28470511 (-) False camkk1a
XM_039778140.1 mRNA upstream 51881 28399367 ~ 28470511 (-) True camkk1a
TU229743 other downstream 90919 28217243 ~ 28223250 (-) True srrm3
XR_005636427.1 other downstream 286392 27930539 ~ 28027777 (-) False LOC120544024
XR_005636444.1 other downstream 584021 27719805 ~ 27730148 (-) False gusb
TU229438 other downstream 795185 27515892 ~ 27518984 (-) False emc6
TU229110 other downstream 1621939 26688879 ~ 26692230 (-) False gng3
TU229887 other upstream 307671 28655157 ~ 28664051 (-) False ube2g1a
TU229954 other upstream 456899 28804385 ~ 28808430 (-) False atp5l
TU230221 other upstream 1414963 29762449 ~ 29796427 (-) True LOC120544028
XR_005636389.1 other upstream 1535320 29882806 ~ 29901937 (-) False LOC120543707
TU230376 other upstream 1598182 29945668 ~ 29948932 (-) False map6a

Expression Profile