Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00006917 |
| length | 808 |
| lncRNA type | retained_intron |
| GC content | 0.40 |
| exon number | 2 |
| gene id | XLOC_003536 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007122.7 |
| NCBI id | CM002895.2 |
| chromosome length | 45484837 |
| location | 30244356 ~ 30252098 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0005575 | cellular_component | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040801-171 | Is expressed in brain and visual system. Human ortholog(s) of this gene implicated in X-linked juvenile retinoschisis 1 and retinoschisis. Orthologous to human RS1 (retinoschisin 1). |
| ensembl_id | ENSDART00000135375 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00008633 | lncRNA | upstream | 146214 | 30091155 ~ 30103837 (+) | False | XLOC_003534 |
| TCONS_00006909 | lncRNA | upstream | 171080 | 30075212 ~ 30078971 (+) | True | XLOC_003533 |
| TCONS_00006903 | lncRNA | upstream | 268079 | 29979257 ~ 29981972 (+) | True | XLOC_003532 |
| TCONS_00008632 | lncRNA | upstream | 343222 | 29905248 ~ 29906829 (+) | True | XLOC_003530 |
| TCONS_00008407 | lncRNA | upstream | 658855 | 29590873 ~ 29591196 (+) | True | XLOC_003524 |
| TCONS_00006918 | lncRNA | downstream | 1004 | 30252940 ~ 30253555 (+) | False | XLOC_003537 |
| TCONS_00006919 | lncRNA | downstream | 1021 | 30252957 ~ 30253557 (+) | True | XLOC_003537 |
| TCONS_00006926 | lncRNA | downstream | 46767 | 30298703 ~ 30300054 (+) | True | XLOC_003541 |
| TCONS_00006953 | lncRNA | downstream | 795918 | 31047854 ~ 31055288 (+) | True | XLOC_003551 |
| TCONS_00008634 | lncRNA | downstream | 953050 | 31204986 ~ 31212769 (+) | True | XLOC_003554 |
| TCONS_00006914 | mRNA | upstream | 17918 | 30162407 ~ 30232133 (+) | True | XLOC_003535 |
| TCONS_00006913 | mRNA | upstream | 18427 | 30162407 ~ 30231624 (+) | False | XLOC_003535 |
| TCONS_00006911 | mRNA | upstream | 18525 | 30161168 ~ 30231526 (+) | False | XLOC_003535 |
| TCONS_00006912 | mRNA | upstream | 18587 | 30161699 ~ 30231464 (+) | False | XLOC_003535 |
| TCONS_00006910 | mRNA | upstream | 146091 | 30091155 ~ 30103960 (+) | True | XLOC_003534 |
| TCONS_00006920 | mRNA | downstream | 2032 | 30253968 ~ 30280857 (+) | False | XLOC_003538 |
| TCONS_00006921 | mRNA | downstream | 2032 | 30253968 ~ 30280958 (+) | False | XLOC_003538 |
| TCONS_00006922 | mRNA | downstream | 2620 | 30254556 ~ 30280116 (+) | True | XLOC_003538 |
| TCONS_00006923 | mRNA | downstream | 30205 | 30282141 ~ 30294085 (+) | True | XLOC_003539 |
| TCONS_00006924 | mRNA | downstream | 43646 | 30295582 ~ 30329055 (+) | False | XLOC_003540 |
| TCONS_00006893 | other | upstream | 678523 | 29566747 ~ 29571528 (+) | True | XLOC_003523 |
| TCONS_00006890 | other | upstream | 897830 | 29352101 ~ 29352221 (+) | True | XLOC_003521 |
| TCONS_00006865 | other | upstream | 2729478 | 27520456 ~ 27520573 (+) | True | XLOC_003503 |
| TCONS_00006853 | other | upstream | 3635464 | 26604611 ~ 26614587 (+) | False | XLOC_003495 |
| TCONS_00006838 | other | upstream | 4171990 | 26077947 ~ 26078061 (+) | True | XLOC_003488 |
| TCONS_00006949 | other | downstream | 720098 | 30972034 ~ 30997832 (+) | False | XLOC_003549 |
| TCONS_00006950 | other | downstream | 722835 | 30974771 ~ 30974892 (+) | True | XLOC_003550 |
| TCONS_00006952 | other | downstream | 763583 | 31015519 ~ 31024572 (+) | True | XLOC_003549 |
| TCONS_00006967 | other | downstream | 1373235 | 31625171 ~ 31671413 (+) | False | XLOC_003561 |
| TCONS_00006968 | other | downstream | 1395008 | 31646944 ~ 31668072 (+) | True | XLOC_003561 |
