RNA id: TCONS_00070553


Basic Information

Item Value
RNA id TCONS_00070553
length 515
lncRNA type retained_intron
GC content 0.43
exon number 3
gene id XLOC_036036
representative False

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 50979018 ~ 51027541 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGGAGGACCTTTTTACGGGAAGCCATGTTGTGTGGAAGGACACTGCTAAGAAGAAAAGGATATTAGAGGTGGACAGTCGTTTAATTAACGCAGAGATGGAAACTCTGATTCCCATCATTAACCGACTGCAGGAGGTCTTCCTCACAGTTGGAGCTGAGATCATCCAGCTTCCTCAGATCGTAGTCGTGGGGTCACAGAGTAGTGGGAAGAGCTCAGTGTTGGAGAGTTTGGTCGGACGGGATTTTCTGCCTCGAGGTTCAGGAATAGTGACGCGTCGCCCTCTAGTGTTACAGCTGGTGAACGTGCCACCTCTGGAGGAGAGACGGAAACAAGACAATGGTAACAactctaaaaaaattaaattcttaTTATTAGTTTTAGACTTGACAAACAAAAATAAGTGCAATTCAAGCTTTATGGATGTGCAATTCCagctttatggatgtgacatttgctgtaAAAACTTCAGAGATTTGCATACACAGAACATTATATTGACACAtcagtttatatt

Function

GO:

id name namespace
GO:0003374 dynamin family protein polymerization involved in mitochondrial fission biological_process
GO:1903146 regulation of autophagy of mitochondrion biological_process
GO:0043653 mitochondrial fragmentation involved in apoptotic process biological_process
GO:0048285 organelle fission biological_process
GO:0048312 intracellular distribution of mitochondria biological_process
GO:0061025 membrane fusion biological_process
GO:0008637 apoptotic mitochondrial changes biological_process
GO:0010821 regulation of mitochondrion organization biological_process
GO:0000266 mitochondrial fission biological_process
GO:0031966 mitochondrial membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-41 Predicted to enable GTPase activity and microtubule binding activity. Predicted to be involved in mitochondrial fission. Predicted to be active in membrane; microtubule; and mitochondrion. Human ortholog(s) of this gene implicated in encephalopathy due to defective mitochondrial and peroxisomal fission 1 and optic atrophy 5. Orthologous to human DNM1L (dynamin 1 like).

Ensembl:

ensembl_id ENSDART00000138422

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072291 lncRNA upstream 446830 50531703 ~ 50532188 (+) False XLOC_036030
TCONS_00072290 lncRNA upstream 464985 50508918 ~ 50514033 (+) True XLOC_036029
TCONS_00072289 lncRNA upstream 705540 50256786 ~ 50273478 (+) True XLOC_036027
TCONS_00072288 lncRNA upstream 937203 50038691 ~ 50041815 (+) True XLOC_036024
TCONS_00072287 lncRNA upstream 1355304 49616496 ~ 49623714 (+) True XLOC_036019
TCONS_00072292 lncRNA downstream 174131 51160606 ~ 51165849 (+) True XLOC_036038
TCONS_00072294 lncRNA downstream 595254 51581729 ~ 51586703 (+) False XLOC_036039
TCONS_00072293 lncRNA downstream 595254 51581729 ~ 51586703 (+) True XLOC_036039
TCONS_00072295 lncRNA downstream 739171 51725646 ~ 51726902 (+) True XLOC_036040
TCONS_00072297 lncRNA downstream 788947 51775422 ~ 51778591 (+) False XLOC_036041
TCONS_00070551 mRNA upstream 16129 50953776 ~ 50962889 (+) True XLOC_036034
TCONS_00070550 mRNA upstream 28469 50946379 ~ 50950549 (+) True XLOC_036033
TCONS_00070549 mRNA upstream 28472 50942240 ~ 50950546 (+) False XLOC_036033
TCONS_00070548 mRNA upstream 139454 50743037 ~ 50839564 (+) True XLOC_036032
TCONS_00070547 mRNA upstream 201268 50742975 ~ 50777750 (+) False XLOC_036032
TCONS_00070556 mRNA downstream 64079 51050554 ~ 51126840 (+) False XLOC_036037
TCONS_00070558 mRNA downstream 98518 51084993 ~ 51147594 (+) False XLOC_036037
TCONS_00070557 mRNA downstream 98518 51084993 ~ 51147594 (+) True XLOC_036037
TCONS_00070559 mRNA downstream 721306 51707781 ~ 51726631 (+) False XLOC_036040
TCONS_00070561 mRNA downstream 972493 51958968 ~ 51986997 (+) False XLOC_036042
TCONS_00070552 other upstream 11019 50966806 ~ 50967999 (+) True XLOC_036035
TCONS_00070536 other upstream 1160147 49801662 ~ 49818871 (+) True XLOC_036021
TCONS_00070526 other upstream 1598715 49378890 ~ 49380303 (+) True XLOC_036016
TCONS_00070520 other upstream 1873967 49092039 ~ 49105051 (+) False XLOC_036010
TCONS_00070506 other upstream 2246160 48732153 ~ 48732858 (+) True XLOC_036001
TCONS_00070562 other downstream 1175386 52161861 ~ 52162964 (+) True XLOC_036043
TCONS_00070576 other downstream 1544462 52530937 ~ 52543392 (+) False XLOC_036052
TCONS_00070587 other downstream 2037064 53023539 ~ 53023617 (+) True XLOC_036064
TCONS_00070588 other downstream 2037204 53023679 ~ 53023764 (+) True XLOC_036065
TCONS_00070598 other downstream 2259167 53245642 ~ 53255762 (+) True XLOC_036071

Expression Profile

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