RNA id: TCONS_00006919


Basic Information

Item Value
RNA id TCONS_00006919
length 521
lncRNA type lincRNA
GC content 0.47
exon number 2
gene id XLOC_003537
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 30252940 ~ 30253557 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTCCTCACTTTTCTGTCCATCATGAAAGCTCCTGGTCTTAAAGGCAAGCGCTGCACGGCATCTCGAAGCTGCATTTCAAAAAACAGAGAACACGCCTCATTCATCTACACGGCCAGACAACAGATGAGTCCGACGGCAGAAAGGCGCGTCCATGAGCCCAGGGGTGTGAGCAGATATTTGCTGCAAAGAGTGGGGTCTGAGGCCGCGCGGCTCTCCTACTTCAGCCGCCACAGGAGCGTTACGCAGAGGGAGATCCTGGAGGCATGGAGCCAGCTAAGAAGCCGCCGCGGGAATACAGCTGCACTGGCTGGAGCTTGAGTCTGGCGTTTTTAAACCACGTTTTAAagtgtattaaattaattttaaatggatgttattatttatttgttgtaataAAGCCATTTTGCTTAACTCGTTTCTTTTCCTGAAGCATGCTAGTTTAATTTCCCCCTCAGGCGAAGCAAGCTCTGTCTGGACATTTTCTTGTAATCGATCTTATTAAACACTAAGTTTATTTGA

Function

GO:

id name namespace
GO:1903371 regulation of endoplasmic reticulum tubular network organization biological_process
GO:1903373 positive regulation of endoplasmic reticulum tubular network organization biological_process
GO:0010638 positive regulation of organelle organization biological_process
GO:0006996 organelle organization biological_process
GO:0006259 DNA metabolic process biological_process
GO:0098826 endoplasmic reticulum tubular network membrane cellular_component
GO:0008263 pyrimidine-specific mismatch base pair DNA N-glycosylase activity molecular_function
GO:0000700 mismatch base pair DNA N-glycosylase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000165480

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006917 lncRNA upstream 1021 30250051 ~ 30251936 (+) True XLOC_003536
TCONS_00008633 lncRNA upstream 149120 30091155 ~ 30103837 (+) False XLOC_003534
TCONS_00006909 lncRNA upstream 173986 30075212 ~ 30078971 (+) True XLOC_003533
TCONS_00006903 lncRNA upstream 270985 29979257 ~ 29981972 (+) True XLOC_003532
TCONS_00008632 lncRNA upstream 346128 29905248 ~ 29906829 (+) True XLOC_003530
TCONS_00006926 lncRNA downstream 45146 30298703 ~ 30300054 (+) True XLOC_003541
TCONS_00006953 lncRNA downstream 794297 31047854 ~ 31055288 (+) True XLOC_003551
TCONS_00008634 lncRNA downstream 951429 31204986 ~ 31212769 (+) True XLOC_003554
TCONS_00008635 lncRNA downstream 951926 31205483 ~ 31209887 (+) True XLOC_003555
TCONS_00006957 lncRNA downstream 983254 31236811 ~ 31240622 (+) True XLOC_003556
TCONS_00006915 mRNA upstream 859 30244356 ~ 30252098 (+) False XLOC_003536
TCONS_00006916 mRNA upstream 1388 30244411 ~ 30251569 (+) False XLOC_003536
TCONS_00006914 mRNA upstream 20824 30162407 ~ 30232133 (+) True XLOC_003535
TCONS_00006913 mRNA upstream 21333 30162407 ~ 30231624 (+) False XLOC_003535
TCONS_00006911 mRNA upstream 21431 30161168 ~ 30231526 (+) False XLOC_003535
TCONS_00006920 mRNA downstream 411 30253968 ~ 30280857 (+) False XLOC_003538
TCONS_00006921 mRNA downstream 411 30253968 ~ 30280958 (+) False XLOC_003538
TCONS_00006922 mRNA downstream 999 30254556 ~ 30280116 (+) True XLOC_003538
TCONS_00006923 mRNA downstream 28584 30282141 ~ 30294085 (+) True XLOC_003539
TCONS_00006924 mRNA downstream 42025 30295582 ~ 30329055 (+) False XLOC_003540
TCONS_00006893 other upstream 681429 29566747 ~ 29571528 (+) True XLOC_003523
TCONS_00006890 other upstream 900736 29352101 ~ 29352221 (+) True XLOC_003521
TCONS_00006865 other upstream 2732384 27520456 ~ 27520573 (+) True XLOC_003503
TCONS_00006853 other upstream 3638370 26604611 ~ 26614587 (+) False XLOC_003495
TCONS_00006838 other upstream 4174896 26077947 ~ 26078061 (+) True XLOC_003488
TCONS_00006949 other downstream 718477 30972034 ~ 30997832 (+) False XLOC_003549
TCONS_00006950 other downstream 721214 30974771 ~ 30974892 (+) True XLOC_003550
TCONS_00006952 other downstream 761962 31015519 ~ 31024572 (+) True XLOC_003549
TCONS_00006967 other downstream 1371614 31625171 ~ 31671413 (+) False XLOC_003561
TCONS_00006968 other downstream 1393387 31646944 ~ 31668072 (+) True XLOC_003561

Expression Profile

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